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bioconductor-bitseq
|
public |
Transcript expression inference and differential expression analysis for RNA-seq data
|
2023-06-16 |
|
bioconductor-sspa
|
public |
General Sample Size and Power Analysis for Microarray and Next-Generation Sequencing Data
|
2023-06-16 |
|
bioconductor-sigpathway
|
public |
Pathway Analysis
|
2023-06-16 |
|
r-phangorn
|
public |
Package contains methods for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation. Allows to compare trees, models selection and offers visualizations for trees and split networks.
|
2023-06-16 |
|
r-data.table
|
public |
Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.
|
2023-06-16 |
|
anvio
|
public |
A platform for integrated multi-omics
|
2023-06-16 |
|
beast2
|
public |
BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences.
|
2023-06-16 |
|
nanostat
|
public |
Calculate statistics for Oxford Nanopore sequencing data and alignments
|
2023-06-16 |
|
eoulsan
|
public |
A pipeline and a framework for NGS analysis (RNA-Seq and Chip-Seq)
|
2023-06-16 |
|
perl-datetime-format-strptime
|
public |
Parse and format strp and strf time patterns
|
2023-06-16 |
|
perl-git-wrapper
|
public |
Wrap git(7) command-line interface
|
2023-06-16 |
|
perl-json-maybexs
|
public |
Use Cpanel::JSON::XS with a fallback to JSON::XS and JSON::PP
|
2023-06-16 |
|
textinput
|
public |
streamlined version of stdlib fileinput
|
2023-06-16 |
|
perl-moosex-types
|
public |
Organise your Moose types in libraries
|
2023-06-16 |
|
perl-moosex-fileattribute
|
public |
Sugar for classes that have file or directory attributes
|
2023-06-16 |
|
perl-git-wrapper-plus
|
public |
A Toolkit for working with Git::Wrapper in an Object Oriented Way.
|
2023-06-16 |
|
perl-color-theme
|
public |
Color theme structure
|
2023-06-16 |
|
perl-test-classapi
|
public |
Provides basic first-pass API testing for large class trees
|
2023-06-16 |
|
autolog
|
public |
quick and easy logging setup
|
2023-06-16 |
|
perl-moosex-getopt
|
public |
A Moose role for processing command line options
|
2023-06-16 |
|
perl-extutils-helpers
|
public |
Various portability utilities for module builders
|
2023-06-16 |
|
cwltest
|
public |
Common workflow language testing framework
|
2023-06-16 |
|
perl-test-harness
|
public |
contributing to TAP::Harness
|
2023-06-16 |
|
perl-text-csv
|
public |
comma-separated values manipulator (using XS or PurePerl)
|
2023-06-16 |
|
genomicconsensus
|
public |
No Summary
|
2023-06-16 |
|
optbuild
|
public |
build command lines for external programs
|
2023-06-16 |
|
perl-class-load-xs
|
public |
XS implementation of parts of Class::Load
|
2023-06-16 |
|
connor
|
public |
A command-line tool to deduplicate bam files based on custom, inline barcoding.
|
2023-06-16 |
|
perl-extutils-installpaths
|
public |
Build.PL install path logic made easy
|
2023-06-16 |
|
junit-xml
|
public |
Creates JUnit XML test result documents that can be read by tools such as Jenkins
|
2023-06-16 |
|
optplus
|
public |
additional options for optparse
|
2023-06-16 |
|
perl-perlio-utf8_strict
|
public |
Fast and correct UTF-8 IO
|
2023-06-16 |
|
pypeflow
|
public |
Light weight and reusable make / flow data process library written in Python
|
2023-06-16 |
|
perl-log-log4perl
|
public |
Log4j implementation for Perl
|
2023-06-16 |
|
perl-module-metadata
|
public |
Gather package and POD information from perl module files
|
2023-06-16 |
|
python-consensuscore
|
public |
PacBio Quiver Consensus library for RSII data
|
2023-06-16 |
|
perl-image-exiftool
|
public |
ExifTool is a platform-independent Perl library plus a command-line application for reading, writing and editing meta information in a wide variety of files.
|
2023-06-16 |
|
agg
|
public |
gvcf aggregation tool
|
2023-06-16 |
|
jbrowse
|
public |
The JBrowse Genome Browser
|
2023-06-16 |
|
perl-parse-yapp
|
public |
A perl frontend to the Parse::Yapp module
|
2023-06-16 |
|
perl-date-manip
|
public |
Date manipulation routines
|
2023-06-16 |
|
perl-test-output
|
public |
Utilities to test STDOUT and STDERR messages.
|
2023-06-16 |
|
nanosim-h
|
public |
NanoSim-H is a simulator of Oxford Nanopore reads that captures the technology-specific features of ONT data, and allows for adjustments upon improvement of Nanopore sequencing technology.
|
2023-06-16 |
|
perl-test-inter
|
public |
framework for more readable interactive test scripts
|
2023-06-16 |
|
starseqr
|
public |
RNA Fusion Detection and Quantification
|
2023-06-16 |
|
python-chado
|
public |
A Python library for interacting with Chado database.
|
2023-06-16 |
|
pbcommand
|
public |
Library for generating the CLI of various PacBio tools
|
2023-06-16 |
|
pbcore
|
public |
A Python library for reading and writing PacBio data files
|
2023-06-16 |
|
riboseed
|
public |
riboSeed: assemble across rDNA regions
|
2023-06-16 |
|
perl-file-path
|
public |
Create or remove directory trees
|
2023-06-16 |
