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ffq
|
public |
A command line tool that makes it easier to find sequencing data from the SRA / GEO / ENA.
|
2024-03-05 |
|
mercat2
|
public |
versatile k-mer counter and diversity estimator for database independent property analysis (DIPA) for multi-omic analysis
|
2024-03-05 |
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screadcounts
|
public |
SCReadCounts is a computational tool for a cell-level assessment of the read counts bearing a particular nucleotide at genomic positions of interest from single cell RNA sequencing (scRNA-seq) data.
|
2024-03-05 |
|
straindesign
|
public |
Library to perform metabolic engineering tasks
|
2024-03-05 |
|
msfragger
|
public |
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
|
2024-03-05 |
|
biodigest
|
public |
In silico Validation of Disease and Gene Sets, Clusterings or Subnetworks (DIGEST)
|
2024-03-05 |
|
somalier
|
public |
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs.
|
2024-03-05 |
|
abra2
|
public |
ABRA2 is an updated implementation of ABRA
|
2024-03-04 |
|
cptac
|
public |
Python packaging for CPTAC data
|
2024-03-04 |
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jronn
|
public |
JRONN is based on the C implementation of RONN algorithm.
|
2024-03-04 |
|
ionquant
|
public |
A label free quantification tool
|
2024-03-02 |
|
drep
|
public |
De-replication of microbial genomes assembled from multiple samples
|
2024-03-01 |
|
circulocov
|
public |
CirculoCov is a Python tool designed for circular-aware coverage analysis of draft genomes
|
2024-02-29 |
|
magic-impute
|
public |
Markov Affinity-based Graph Imputation of Cells
|
2024-02-29 |
|
nanoinsight
|
public |
Repeat annotation tool for insertions called by NanoVar
|
2024-02-28 |
|
gecco
|
public |
Biosynthetic Gene Cluster prediction with Conditional Random Fields.
|
2024-02-28 |
|
curare
|
public |
A Customizable and Reproducible Analysis Pipeline for RNA-Seq Experiments.
|
2024-02-28 |
|
ont-fast5-api
|
public |
Oxford Nanopore Technologies fast5 API software
|
2024-02-28 |
|
aacon
|
public |
AACon: A Fast Amino Acid Conservation Calculation Service
|
2024-02-26 |
|
piscem-infer
|
public |
piscem-infer is a flexible tool to perform target quantification from bulk-sequencing data
|
2024-02-26 |
|
cobra-meta
|
public |
COBRA is a tool to get higher quality viral genomes assembled from metagenomes.
|
2024-02-26 |
|
cosg
|
public |
Accurate and fast cell marker gene identification with COSG
|
2024-02-25 |
|
insilicoseq
|
public |
A sequencing simulator.
|
2024-02-23 |
|
dudes
|
public |
DUDes: a top-down taxonomic profiler for metagenomics and metaproteomics
|
2024-02-22 |
|
ngs-chew
|
public |
Simple QC and sanity checking of germline NGS data
|
2024-02-21 |
|
scanpy-scripts
|
public |
Scripts for using scanpy from the command line
|
2024-02-21 |
|
biocommons.seqrepo
|
public |
Python package for writing and reading a local collection of biological sequences.
|
2024-02-20 |
|
sctriangulate
|
public |
A Python package to mix-and-match conflicting clustering results in single cell analysis, and generate reconciled clustering solutions.
|
2024-02-19 |
|
mirmachine
|
public |
A command line to tool detect miRNA homologs in genome sequences.
|
2024-02-19 |
|
braker3
|
public |
BRAKER3 is the latest pipeline in the BRAKER suite
|
2024-02-18 |
|
serotypefinder
|
public |
SerotypeFinder identifies the serotype in total or partial sequenced isolates of E. coli.
|
2024-02-16 |
|
bigscape
|
public |
Biosynthetic Genes Similarity Clustering and Prospecting Engine.
|
2024-02-16 |
|
badread
|
public |
A long read simulator that can imitate many types of read problems
|
2024-02-16 |
|
sercol
|
public |
Rich collection class with grouping and filtering helpers
|
2024-02-15 |
|
terrace
|
public |
TERRACE is an assembler for circular RNAs.
|
2024-02-15 |
|
antismash
|
public |
antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell
|
2024-02-14 |
|
ontime
|
public |
Extract subsets of ONT (Nanopore) reads based on time
|
2024-02-13 |
|
mira-multiome
|
public |
Single-cell multiomics data analysis
|
2024-02-12 |
|
lisa2
|
public |
Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data. X. Shirley Liu Lab, 2020
|
2024-02-12 |
|
pass
|
public |
Proteome Assembler with Short Sequence peptides
|
2024-02-12 |
|
pytransaln
|
public |
Translation-guided nucleotide alignment for coding sequences
|
2024-02-10 |
|
r-linxreport
|
public |
LINX Result Reporter
|
2024-02-10 |
|
purge_haplotigs
|
public |
Pipeline to help with curating heterozygous diploid genome assemblies.
|
2024-02-09 |
|
gffpandas
|
public |
Parse GFF3 into Pandas dataframes
|
2024-02-09 |
|
perl-ms
|
public |
Namespace for mass spectrometry-related libraries
|
2024-02-09 |
|
orsum
|
public |
A tool to filter long lists of enriched terms resulting from one or more enrichment analyses
|
2024-02-08 |
|
koverage
|
public |
Read-coverage statistics pipelines for multiple samples
|
2024-02-08 |
|
snaketool-utils
|
public |
Utility functions for Snaketool CLI for bioinformatics tools
|
2024-02-08 |
|
virulencefinder
|
public |
VirulenceFinder identifies virulence genes in total or partial sequenced isolates of bacteria
|
2024-02-07 |
|
r-chord
|
public |
Predict HRD using somatic mutations contexts
|
2024-02-07 |
