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agfusion
|
public |
Python package to annotate and visualize gene fusions.
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2024-09-30 |
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snakeobjects
|
public |
Snakeobjects, an object-oriented workflow management system based on snakemake
|
2024-09-27 |
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baltic
|
public |
Lightweight package for analyzing, manipulating and visualizing annotated phylogenetic trees.
|
2024-09-27 |
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gbintk
|
public |
GraphBin-Tk: assembly graph-based metagenomic binning toolkit
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2024-09-27 |
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giatools
|
public |
Tools required for Galaxy Image Analysis
|
2024-09-27 |
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fast-edit-distance
|
public |
A implementation of edit distance with improved runtime.
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2024-09-27 |
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repic
|
public |
REPIC - an ensemble learning approach to cryo-EM particle picking.
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2024-09-26 |
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gget
|
public |
gget enables efficient querying of genomic databases.
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2024-09-26 |
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hopla
|
public |
Hopla enables classic genomic single, duo, trio, etc., analysis, by studying a single (multisample) vcf-file
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2024-09-26 |
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architeuthis
|
public |
Tool to analyze and summarize data for Kraken.
|
2024-09-26 |
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biobb_structure_checking
|
public |
BioBB_structure_checking performs MDWeb structure checking set as a command line utility.
|
2024-09-26 |
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metacoag
|
public |
MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
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2024-09-26 |
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graphbin2
|
public |
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
|
2024-09-26 |
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vsnp3
|
public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
|
2024-09-25 |
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hiphase
|
public |
Small and structural variant phasing tool for PacBio HiFi reads
|
2024-09-25 |
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fiji-simple_omero_client
|
public |
Java library to simplify API to put/get objects on an OMERO server from Fiji/ImageJ.
|
2024-09-25 |
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mview
|
public |
MView extracts and reformats the results of a sequence database search or multiple alignment.
|
2024-09-25 |
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recentrifuge
|
public |
Robust comparative analysis and contamination removal for metagenomics
|
2024-09-25 |
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planemo
|
public |
Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/).
|
2024-09-24 |
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msisensor-rna
|
public |
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data.
|
2024-09-24 |
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mgatk
|
public |
Mitochondrial genome analysis toolkit.
|
2024-09-23 |
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vembrane
|
public |
Filter VCF/BCF files with Python expressions.
|
2024-09-23 |
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macrel
|
public |
A pipeline for AMP (antimicrobial peptide) prediction
|
2024-09-23 |
|
tooldistillator
|
public |
Tool to extract and aggregate information from different tool outputs to JSON parsable files
|
2024-09-23 |
|
reneo
|
public |
Reneo: Unraveling Viral Genomes from Metagenomes
|
2024-09-23 |
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checkm-genome
|
public |
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
|
2024-09-23 |
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bactopia
|
public |
Bactopia is a flexible pipeline for complete analysis of bacterial genomes.
|
2024-09-22 |
|
fastlin
|
public |
fastlin, ultra-fast MTBC lineage typing
|
2024-09-22 |
|
perl-minion
|
public |
Job queue
|
2024-09-21 |
|
recognizer
|
public |
A tool for domain based annotation with the COG database
|
2024-09-21 |
|
eukfinder
|
public |
Eukfinder is a tool for detecting eukaryotic sequences in metagenomic data.
|
2024-09-21 |
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bactopia-qc
|
public |
The methods used in Bactopia for read QC
|
2024-09-21 |
|
percolator
|
public |
Semi-supervised learning for peptide identification from shotgun proteomics datasets.
|
2024-09-20 |
|
phylodeep
|
public |
Deep-learning parameter estimation and model selection from phylogenetic trees.
|
2024-09-20 |
|
fastq-screen
|
public |
FastQ Screen allows you to screen a library of sequences in FastQ format against a set of sequence databases so you can see if the composition of the library matches with what you expect.
|
2024-09-20 |
|
seurat-scripts
|
public |
A set of wrappers for individual components of the Seurat package.
|
2024-09-20 |
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busco_phylogenomics
|
public |
Utility script to construct species phylogenies using BUSCO proteins.
|
2024-09-20 |
|
peptides
|
public |
Physicochemical properties, indices and descriptors for amino-acid sequences.
|
2024-09-19 |
|
scarches
|
public |
Transfer learning with Architecture Surgery on Single-cell data
|
2024-09-19 |
|
superdsm
|
public |
SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.
|
2024-09-19 |
|
methylartist
|
public |
Tools for parsing and plotting nanopore methylation data
|
2024-09-19 |
|
igv-reports
|
public |
Creates self-contained html pages for visual variant review with IGV (igv.js).
|
2024-09-18 |
|
repeatmasker
|
public |
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
|
2024-09-17 |
|
genomepy
|
public |
Install and use genomes & gene annotations the easy way!
|
2024-09-17 |
|
hylight
|
public |
Strain aware assembly of low coverage metagenomes.
|
2024-09-17 |
|
transanno
|
public |
accurate VCF/GFF3/GTF LiftOver tool for new genome assemblies
|
2024-09-17 |
|
biophi
|
public |
BioPhi open-source antibody design platform.
|
2024-09-17 |
|
fiji-omero_ij
|
public |
ImageJ / Fiji plugin to visualize and manipulate both image data and metadata maintained at an OMERO server site.
|
2024-09-17 |
|
mirtop
|
public |
Small RNA-seq annotation.
|
2024-09-17 |
|
cellprofiler-core
|
public |
Dependency for CellProfiler v4.
|
2024-09-17 |
