| Package Name | Access | Summary | Updated |
|---|---|---|---|
| annotsv | public | Annotation and Ranking of Structural Variation. | 2025-09-12 |
| gtdbtk | public | A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. | 2025-09-12 |
| isodesign | public | Facilitates the choice of the optimal isotopic composition of labeled substrates in 13C-fluxomics experiments. | 2025-09-12 |
| treesimulator | public | Simulation of rooted phylogenetic trees under a given Multitype Birth–Death (MTBD) model. | 2025-09-12 |
| easypqp | public | EasyPQP: Simple library generation for OpenSWATH | 2025-09-11 |
| artic | public | ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore. | 2025-09-11 |
| jbrowse2 | public | The JBrowse 2 Genome Browser | 2025-09-11 |
| pango-designation | public | Repository for suggesting new lineages that should be added to the current scheme. | 2025-09-11 |
| straglr | public | Short-tandem repeat genotyping using long reads | 2025-09-10 |
| tobias | public | Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal. | 2025-09-10 |
| sequali | public | Fast sequencing quality metrics | 2025-09-10 |
| dfast | public | DDBJ Fast Annotation and Submission Tool - Prokaryotic genome annotation pipeline | 2025-09-10 |
| varpubs | public | Tool for finding PubMed evidence on genetic variants and generating LLM-based summaries | 2025-09-10 |
| dpcstruct | public | Unsupervised clustering algorithm for identifying and classifying protein domains based on structural similarity. | 2025-09-10 |
| tagra | public | TaGra: TAbular data preprocessing to GRAph representation. | 2025-09-10 |
| cdst | public | CoDing Sequence Typer (CDST): MD5 hash-based genome typing and clustering. | 2025-09-10 |
| alloshp | public | From mapped reads to Single Homeologous Polymorphisms (SHPs): pipeline for phylogenetic studies of allopolyploids | 2025-09-10 |
| lexicmap | public | efficient sequence alignment against millions of prokaryotic genomes | 2025-09-10 |
| neat | public | Toolset for generating synthethic FASTQ, VCF and BAM files. | 2025-09-10 |
| mity | public | Mity is a bioinformatic analysis pipeline designed to call mitochondrial SNV and INDEL variants from Whole Genome Sequencing (WGS) data. | 2025-09-10 |
| porechop_abi | public | Adapter inferrence and removal of Oxford Nanopore reads. | 2025-09-10 |
| marti | public | Metagenomic Analysis in Real Time | 2025-09-10 |
| gaftools | public | gaftools is a fast and comprehensive toolkit designed for processing pangenome alignments in GAF format | 2025-09-10 |
| gsmap | public | gsMap (genetically informed spatial mapping of cells for complex traits). | 2025-09-10 |
| metabolabpy | public | Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis. | 2025-09-10 |
