| Package Name | Access | Summary | Updated |
|---|---|---|---|
| psirc | public | Full-length linear and circular transcript isoform reconstruction and quantification. | 2025-04-22 |
| pathogen-embed | public | Create reduced dimension embeddings for pathogen sequences | 2025-04-22 |
| tcfinder | public | A lightweight tool to find clusters of samples within a phylogeny. | 2025-04-22 |
| cosap | public | COSAP - Comparative Sequencing Analysis Platform | 2025-04-22 |
| bamsurgeon | public | Tools for adding genomic variants to BAM/SAM/CRAM files. Can be used to test variant callers. | 2025-04-22 |
| deepblast | public | Neural Networks for Protein Sequence Alignment. | 2025-04-22 |
| mmlong2 | public | An all-in-one genome-centric metagenomics workflow using long reads | 2025-04-22 |
| pygcap | public | Python package for probe-based gene cluster finding in large microbial genome database. | 2025-04-22 |
| survindel2 | public | A CNV caller for Illumina paired-end WGS data. | 2025-04-22 |
| r-hgvsparser | public | hgvsParseR | 2025-04-22 |
| reads2graph | public | reads2graph is an efficient tool for constructing edit-distance-based read graph from short-read sequencing data. | 2025-04-22 |
| pydna_repeatfinder | public | Search for direct and inverted repeats in DNA sequences. | 2025-04-22 |
| dice | public | Cell lineage reconstruction from single-cell CNA data | 2025-04-22 |
| fast-edit-distance | public | A implementation of edit distance with improved runtime. | 2025-04-22 |
| venndata | public | Package for plotting Venn diagrams with more than 3 sets | 2025-04-22 |
| difcover | public | Pipeline to identify genomic regions with read coverage differences between pairs of samples | 2025-04-22 |
| plinkio | public | A library for parsing plink genotype files | 2025-04-22 |
| strdust | public | Tandem repeat genotyper for long reads. | 2025-04-22 |
| rabbittclust | public | RabbitTClust enables fast clustering analysis of millions bacteria genomes with MinHash sketches | 2025-04-22 |
| pydbsnp | public | Interface with dbSNP VCF data | 2025-04-22 |
| cnasim | public | Improved simulation of single-cell copy number profiles and DNA-seq data from tumors | 2025-04-22 |
| classpro | public | A K-mer classifier for HiFi reads . | 2025-04-22 |
| rnavirhost | public | RNAVirHost: a machine learning-based method for predicting hosts of RNA viruses through viral genomes | 2025-04-22 |
| sneakernet-qc | public | A QC pipeline for raw reads | 2025-04-22 |
| metav | public | Rapid detection and classification of viruses in metagenomics sequencing. | 2025-04-22 |
