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centrifuge
|
public |
Classifier for metagenomic sequences. Supports classifier scripts
|
2024-12-13 |
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minimap2-coverage
|
public |
A versatile pairwise aligner for genomic and spliced nucleotide sequences modified for use by LongQC
|
2024-12-13 |
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pbgzip
|
public |
Parallel Block GZIP
|
2024-12-13 |
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r-scimpute
|
public |
scImpute is accurate and robust imputation of single-cell RNA sequencing data.
|
2024-12-13 |
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ucsc-qatoqac
|
public |
convert from uncompressed to compressed
|
2024-12-13 |
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r-lisi
|
public |
This method was designed to assess how well mixed cells with different labels are in single cell RNAseq. This method uses the Inverse Simpson's Index to compute diversity of each cell's local neighborhood.
|
2024-12-13 |
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ucsc-genepredfilter
|
public |
filter a genePred file
|
2024-12-13 |
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me-pcr
|
public |
Multithreaded Electronic PCR (in-silico PCR) based on NCBI e-PCR.
|
2024-12-13 |
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mbgc
|
public |
A tool for compressing collection of genomes in FASTA format
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2024-12-13 |
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bedtk
|
public |
Bedtk is a set of simple tools to process BED files.
|
2024-12-13 |
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dnp-diprofile
|
public |
Dinucleotide frequency of occurrence in a batch of fasta sequences
|
2024-12-13 |
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bfc
|
public |
BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data.
|
2024-12-13 |
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ucsc-hggcpercent
|
public |
Calculate GC Percentage in 20kb windows
|
2024-12-13 |
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ucsc-parafetch
|
public |
try to fetch url with multiple connections
|
2024-12-13 |
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ucsc-gmtime
|
public |
convert unix timestamp to date string
|
2024-12-13 |
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ucsc-subcolumn
|
public |
Substitute one column in a tab-separated file.
|
2024-12-13 |
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flexiplex
|
public |
flexiplex: the flexible demultiplexer
|
2024-12-13 |
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ucsc-farandomize
|
public |
Program to create random fasta records
|
2024-12-13 |
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ucsc-pslpretty
|
public |
Convert PSL to human-readable output
|
2024-12-13 |
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perl-crypt-openssl-random
|
public |
No Summary
|
2024-12-13 |
|
razers3
|
public |
RazerS 3 - Faster, fully sensitive read mapping
|
2024-12-13 |
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bamtools
|
public |
C++ API & command-line toolkit for working with BAM data
|
2024-12-13 |
|
ucsc-bedtopsl
|
public |
convert bed format files to psl format
|
2024-12-13 |
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ucsc-subchar
|
public |
Substitute one character for another throughout a file.
|
2024-12-13 |
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mcl
|
public |
MCL - a cluster algorithm for graphs
|
2024-12-13 |
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ffindex
|
public |
FFindex - A database wrapped around mmap.
|
2024-12-13 |
|
eigensoft
|
public |
The EIGENSOFT package implements methods for analzing population structure and performing stratification correction
|
2024-12-13 |
|
simlord
|
public |
SimLoRD is a read simulator for long reads from third generation sequencing. Currently, it supports the Pacific Biosciences SMRT error model.
|
2024-12-12 |
|
ccphylo
|
public |
CCPhylo enables phylogenetic analysis of samples based on overlaps between nucleotide created by e.g. KMA. Input file(s) may be given as non-option arguments succeding all options.
|
2024-12-12 |
|
bayescan
|
public |
Phylogenetics - Randomized Axelerated Maximum Likelihood.
|
2024-12-12 |
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cd-hit-auxtools
|
public |
Clusters and compares protein or nucleotide sequences
|
2024-12-12 |
|
fastq-tools
|
public |
A collection of fastq manipulation scripts written in C for speed.
|
2024-12-12 |
|
eternafold
|
public |
RNA structure prediction algorithm improved through crowdsourced training data
|
2024-12-12 |
|
perl-perlio-gzip
|
public |
PerlIO interface to gzip/gunzip
|
2024-12-12 |
|
multiz
|
public |
DNA multiple sequence aligner from Penn State's Miller lab.
|
2024-12-12 |
|
canopy
|
public |
Canopy - Metagenomics Canopy Clustering Implementation
|
2024-12-12 |
|
genepop
|
public |
Population Genetic Data Analysis package.
|
2024-12-12 |
|
flexserv
|
public |
FlexServ protein structure conformational ensemble generation tools
|
2024-12-12 |
|
ucsc-fasomerecords
|
public |
Extract multiple fa records
|
2024-12-12 |
|
zagros
|
public |
No Summary
|
2024-12-12 |
|
perl-findbin-real
|
public |
Locates the full path to the script bin directory to allow the use of paths relative to the bin directory.
|
2024-12-12 |
|
gfatools
|
public |
Tools for manipulating sequence graphs in the GFA and rGFA formats
|
2024-12-12 |
|
perl-list-someutils
|
public |
Provide the stuff missing in List::Util
|
2024-12-12 |
|
bloocoo
|
public |
Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint. As an example, it can correct whole human genome re-sequencing reads at 70 x coverage with less than 4GB of memory.
|
2024-12-12 |
|
isospecpy
|
public |
Python interface to IsoSpec++ isotopic envelope calculator library
|
2024-12-12 |
|
raptor
|
public |
Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences
|
2024-12-12 |
|
r-goalie
|
public |
Assertive check functions for defensive R programming.
|
2024-12-12 |
|
cofold
|
public |
An RNA secondary structure prediction method that takes co-transcriptional folding into account.
|
2024-12-12 |
|
nmrglue
|
public |
A module for working with NMR data in Python
|
2024-12-12 |
|
maxit
|
public |
MAXIT assists in the processing and curation of macromolecular structure data.
|
2024-12-12 |
