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bioconductor-mus.musculus
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public |
Contains the Mus.musculus object to access data from several related annotation packages.
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2024-12-29 |
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bioconductor-txdb.mmusculus.ucsc.mm10.ensgene
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public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
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2024-12-28 |
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bioconductor-fdb.fantom4.promoters.hg19
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public |
FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified
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2024-12-28 |
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bioconductor-qpgraph
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public |
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
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2024-12-28 |
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bioconductor-edaseq
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public |
Exploratory Data Analysis and Normalization for RNA-Seq
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2024-12-28 |
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bioconductor-txdb.athaliana.biomart.plantsmart22
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public |
Exposes an annotation databases generated from BioMart by exposing these as TxDb objects
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2024-12-28 |
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bioconductor-bumphunter
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public |
Bump Hunter
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2024-12-28 |
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bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene
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public |
Annotation package for TxDb object(s)
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2024-12-28 |
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bioconductor-sgseq
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public |
Splice event prediction and quantification from RNA-seq data
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2024-12-28 |
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bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts
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public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
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2024-12-28 |
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bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene
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public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
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2024-12-28 |
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bioconductor-txdb.celegans.ucsc.ce6.ensgene
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public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
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2024-12-28 |
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bioconductor-fdb.ucsc.trnas
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public |
Exposes an annotation databases generated from UCSC by exposing these as FeatureDb objects
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2024-12-28 |
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bioconductor-txdb.drerio.ucsc.danrer10.refgene
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public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
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2024-12-28 |
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bioconductor-txdb.ggallus.ucsc.galgal5.refgene
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public |
Annotation package for TxDb object(s)
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2024-12-28 |
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bioconductor-splicinggraphs
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public |
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
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2024-12-28 |
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bioconductor-txdb.scerevisiae.ucsc.saccer2.sgdgene
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public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
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2024-12-28 |
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bioconductor-txdb.athaliana.biomart.plantsmart25
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public |
Exposes an annotation databases generated from BioMart by exposing these as TxDb objects
|
2024-12-28 |
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bioconductor-txdb.mmusculus.ucsc.mm9.knowngene
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public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
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bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene
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public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-txdb.hsapiens.biomart.igis
|
public |
Exposes an annotation databases generated from BioMart by exposing these as TxDb objects
|
2024-12-28 |
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bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-txdb.ptroglodytes.ucsc.pantro5.refgene
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public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-txdb.sscrofa.ucsc.susscr3.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-txdb.mmusculus.ucsc.mm10.knowngene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-geneattribution
|
public |
Identification of candidate genes associated with genetic variation
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2024-12-28 |
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bioconductor-txdb.btaurus.ucsc.bostau8.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-guitar
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public |
Guitar
|
2024-12-28 |
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bioconductor-homo.sapiens
|
public |
Contains the Homo.sapiens object to access data from several related annotation packages.
|
2024-12-28 |
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bioconductor-cpvsnp
|
public |
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets
|
2024-12-28 |
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bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
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bioconductor-ivas
|
public |
Identification of genetic Variants affecting Alternative Splicing
|
2024-12-28 |
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bioconductor-variantannotation
|
public |
Annotation of Genetic Variants
|
2024-12-28 |
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bioconductor-casper
|
public |
Characterization of Alternative Splicing based on Paired-End Reads
|
2024-12-28 |
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bioconductor-phenotest
|
public |
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.
|
2024-12-28 |
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bioconductor-genextender
|
public |
Optimized Functional Annotation Of ChIP-seq Data
|
2024-12-28 |
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bioconductor-maftools
|
public |
Summarize, Analyze and Visualize MAF Files
|
2024-12-28 |
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bioconductor-flowvs
|
public |
Variance stabilization in flow cytometry (and microarrays)
|
2024-12-28 |
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bioconductor-ggcyto
|
public |
Visualize Cytometry data with ggplot
|
2024-12-28 |
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bioconductor-flowstats
|
public |
Statistical methods for the analysis of flow cytometry data
|
2024-12-28 |
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bioconductor-rtracklayer
|
public |
R interface to genome annotation files and the UCSC genome browser
|
2024-12-27 |
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bioconductor-genomicalignments
|
public |
Representation and manipulation of short genomic alignments
|
2024-12-27 |
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bioconductor-csaw
|
public |
ChIP-Seq Analysis with Windows
|
2024-12-27 |
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bioconductor-rhtslib
|
public |
HTSlib high-throughput sequencing library as an R package
|
2024-12-27 |
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r-spp
|
public |
Analysis of ChIP-seq and other functional sequencing data [Kharchenko PV (2008) <DOI:10.1038/nbt.1508>].
|
2024-12-27 |
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bioconductor-rsamtools
|
public |
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
|
2024-12-27 |
|
bioconductor-bamsignals
|
public |
Extract read count signals from bam files
|
2024-12-27 |
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bioconductor-netpathminer
|
public |
NetPathMiner for Biological Network Construction, Path Mining and Visualization
|
2024-12-27 |
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bioconductor-wavcluster
|
public |
Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data
|
2024-12-27 |
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bioconductor-txdb.ptroglodytes.ucsc.pantro4.refgene
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public |
Annotation package for TxDb object(s)
|
2024-12-27 |
