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bioconda / packages

Package Name Access Summary Updated
squid public Detector for fusion-gene and non-fusion-gene transcriptomic structural variations from RNA-seq data 2025-09-24
perl-module-corelist public What modules shipped with versions of perl. 2025-09-24
ensembl-vep public Ensembl Variant Effect Predictor 2025-09-24
perl-test-inter public Framework for more readable interactive test scripts. 2025-09-24
imfusion public No Summary 2025-09-24
wgsim public No Summary 2025-09-24
tophat public A spliced read mapper for RNA-Seq. 2025-09-24
flash2 public Merge paired-end reads from fragments that are shorter than twice the read length 2025-09-24
squeakr public An Exact and Approximate k-mer Counting System. 2025-09-24
mira public MIRA is a whole genome shotgun and EST sequence assembler for Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio (the later at the moment only CCS and error-corrected CLR reads). 2025-09-24
perl-sys-info-driver-osx public OSX driver for Sys::Info. 2025-09-24
snakemake-minimal public A popular workflow management system aiming at full in-silico reproducibility. 2025-09-24
snakemake public A popular workflow management system aiming at full in-silico reproducibility. 2025-09-24
hyphy public An open-source software package for comparative sequence analysis using stochastic evolutionary models. 2025-09-24
miranda public An algorithm for finding genomic targets for microRNAs 2025-09-24
ariba public ARIBA: Antibiotic Resistance Identification By Assembly. 2025-09-23
ra public Ra is short for RNA Assembler and it is a C++ implementation of an overlap-layout-consensus transcriptome assembler. 2025-09-23
links public Long Interval Nucleotide K-mer Scaffolder 2025-09-23
metilene public Fast and sensitive detection of differential DNA methylation 2025-09-23
gap2seq public Gap2Seq is a tool for filling gaps between contigs in genome assemblies. 2025-09-23
sga public SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads. 2025-09-23
snpeff public Genetic variant annotation and effect prediction toolbox 2025-09-23
snpsift public Toolbox that allows you to filter and manipulate annotated files 2025-09-23
discosnp public reference-free small variant caller for short read sequencing data 2025-09-23
assembly-stats public Get assembly statistics from FASTA and FASTQ files 2025-09-23

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