| Package Name | Access | Summary | Updated |
|---|---|---|---|
| squid | public | Detector for fusion-gene and non-fusion-gene transcriptomic structural variations from RNA-seq data | 2025-09-24 |
| perl-module-corelist | public | What modules shipped with versions of perl. | 2025-09-24 |
| ensembl-vep | public | Ensembl Variant Effect Predictor | 2025-09-24 |
| perl-test-inter | public | Framework for more readable interactive test scripts. | 2025-09-24 |
| imfusion | public | No Summary | 2025-09-24 |
| wgsim | public | No Summary | 2025-09-24 |
| tophat | public | A spliced read mapper for RNA-Seq. | 2025-09-24 |
| flash2 | public | Merge paired-end reads from fragments that are shorter than twice the read length | 2025-09-24 |
| squeakr | public | An Exact and Approximate k-mer Counting System. | 2025-09-24 |
| mira | public | MIRA is a whole genome shotgun and EST sequence assembler for Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio (the later at the moment only CCS and error-corrected CLR reads). | 2025-09-24 |
| perl-sys-info-driver-osx | public | OSX driver for Sys::Info. | 2025-09-24 |
| snakemake-minimal | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-09-24 |
| snakemake | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-09-24 |
| hyphy | public | An open-source software package for comparative sequence analysis using stochastic evolutionary models. | 2025-09-24 |
| miranda | public | An algorithm for finding genomic targets for microRNAs | 2025-09-24 |
| ariba | public | ARIBA: Antibiotic Resistance Identification By Assembly. | 2025-09-23 |
| ra | public | Ra is short for RNA Assembler and it is a C++ implementation of an overlap-layout-consensus transcriptome assembler. | 2025-09-23 |
| links | public | Long Interval Nucleotide K-mer Scaffolder | 2025-09-23 |
| metilene | public | Fast and sensitive detection of differential DNA methylation | 2025-09-23 |
| gap2seq | public | Gap2Seq is a tool for filling gaps between contigs in genome assemblies. | 2025-09-23 |
| sga | public | SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads. | 2025-09-23 |
| snpeff | public | Genetic variant annotation and effect prediction toolbox | 2025-09-23 |
| snpsift | public | Toolbox that allows you to filter and manipulate annotated files | 2025-09-23 |
| discosnp | public | reference-free small variant caller for short read sequencing data | 2025-09-23 |
| assembly-stats | public | Get assembly statistics from FASTA and FASTQ files | 2025-09-23 |
