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r-rebird
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public |
A programmatic client for the eBird database, including functions for searching for bird observations by geographic location (latitude, longitude), eBird hotspots, location identifiers, by notable sightings, by region, and by taxonomic name.
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2025-04-22 |
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r-ridigbio
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public |
An interface to iDigBio's search API that allows downloading specimen records. Searches are returned as a data.frame. Other functions such as the metadata end points return lists of information. iDigBio is a US project focused on digitizing and serving museum specimen collections on the web. See <https://www.idigbio.org> for information on iDigBio.
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2025-04-22 |
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r-wicket
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public |
Utilities to generate bounding boxes from 'WKT' (Well-Known Text) objects and R data types, validate 'WKT' objects and convert object types from the 'sp' package into 'WKT' representations.
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2025-04-22 |
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illumiprocessor
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public |
illumiprocessor is a tool to batch process illumina sequencing reads using the excellent trimmomatic package.
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2025-04-22 |
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migraine
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public |
Implements coalescent algorithms for maximum likelihood analysis of population genetic data. The data currently handled are allelic counts but sequences will be handled in the forthcoming version.
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2025-04-22 |
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snpsplit
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public |
SNPsplit is an allele-specific alignment sorter which is designed to read in alignment files in SAM/BAM format and determine the allelic origin of reads that cover known SNP positions.
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2025-04-22 |
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bioconductor-microbiome
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public |
Microbiome Analytics
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2025-04-22 |
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r-zerone
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public |
Zerone discretizes several ChIP-seq replicates simultaneously and resolves conflicts between them.
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2025-04-22 |
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fermi-lite
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public |
Fermi-lite is a standalone C library as well as a command-line tool for assembling Illumina short reads in regions from 100bp to 10 million bp in size.
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2025-04-22 |
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satrap
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public |
A SOLiD assembly translation program.
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2025-04-22 |
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bioconductor-curatedmetagenomicdata
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public |
Curated Metagenomic Data of the Human Microbiome
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2025-04-22 |
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agfusion
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public |
Python package to annotate and visualize gene fusions.
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2025-04-22 |
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pyensembl
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public |
Python interface to ensembl reference genome metadata
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2025-04-22 |
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bioconductor-experimenthub
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public |
Client to access ExperimentHub resources
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2025-04-22 |
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r-ecodist
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public |
Dissimilarity-based analysis functions including ordination and Mantel test functions, intended for use with spatial and community data.
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2025-04-22 |
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r-adephylo
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public |
Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa.
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2025-04-22 |
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r-phylobase
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public |
Provides a base S4 class for comparative methods, incorporating one or more trees and trait data.
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2025-04-22 |
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r-rnexml
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public |
Provides access to phyloinformatic data in 'NeXML' format. The package should add new functionality to R such as the possibility to manipulate 'NeXML' objects in more various and refined way and compatibility with 'ape' objects.
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2025-04-22 |
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bioconductor-flowsorted.blood.450k
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public |
Illumina HumanMethylation data on sorted blood cell populations
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2025-04-22 |
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asqcan
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public |
A combined pipeline for bacterial genome assembly, quality control and annotation
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2025-04-22 |
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drep
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public |
De-replication of microbial genomes assembled from multiple samples.
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2025-04-22 |
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mob_suite
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public |
MOB-suite is a set of tools for finding, typing and reconstruction of plasmids from draft and complete genome assemblies.
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2025-04-22 |
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real
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public |
REad ALigner for Next-Generation sequencing reads.
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2025-04-22 |
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bioconductor-pathprint
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public |
Pathway fingerprinting for analysis of gene expression arrays
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2025-04-22 |
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hic2cool
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public |
A converter between .hic files (from juicer) and single-resolution or multi-resolution .cool files (for cooler).
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2025-04-22 |
