| Package Name | Access | Summary | Updated |
|---|---|---|---|
| pymot | public | No Summary | 2025-04-22 |
| munkres | public | No Summary | 2025-04-22 |
| python-omero | public | Client library offering helper methods to access an OMERO server. | 2025-04-22 |
| zeroc-ice | public | Ice is a comprehensive RPC framework that helps you network your software with minimal effort. | 2025-04-22 |
| ibdne | public | No Summary | 2025-04-22 |
| ibdseq | public | No Summary | 2025-04-22 |
| plastid | public | plastid is a Python library for genomic analysis -- in particular, high-throughput sequencing data | 2025-04-22 |
| metavelvet-sl-pipeline | public | No Summary | 2025-04-22 |
| jaffa | public | JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts then searches for gene fusions. This package contains the wrappers jaffa-direct, jaffa-assembly, and jaffa-hybrid. You can pass the "refSeq" parameter in the environment variables JAFFA_REF_BASE. Otherwise, pass any paramters to the wrappers as you would to the bpipe JAFFA_{method} call in the manual. | 2025-04-22 |
| probamconvert | public | proBAMconvert is a conversion tool to convert common peptide identification files (mzIdentML, pepXML, mzTAB) to the proBAM or proBED format | 2025-04-22 |
| perl-list-compare | public | No Summary | 2025-04-22 |
| perl-sub-name | public | No Summary | 2025-04-22 |
| perl-text-template | public | No Summary | 2025-04-22 |
| bpipe | public | Bpipe - a tool for running and managing bioinformatics pipelines | 2025-04-22 |
| beast2 | public | BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences. | 2025-04-22 |
| selectsequencesfrommsa | public | Tool to select representative sequences from a multiple sequence alignment | 2025-04-22 |
| libidn | public | No Summary | 2025-04-22 |
| pybel | public | PyBEL is a Python package for parsing and handling biological networks encoded in the Biological Expression Language (BEL). | 2025-04-22 |
| onto2nx | public | A package for parsing ontologies in the OWL and OBO format into NetworkX graphs | 2025-04-22 |
| pullseq | public | No Summary | 2025-04-22 |
| rna-seqc | public | Fast, efficient RNA-Seq metrics for quality control and process optimization. | 2025-04-22 |
| strelka | public | Strelka calls somatic and germline small variants from mapped sequencing reads | 2025-04-22 |
| soapsplice | public | No Summary | 2025-04-22 |
| jannovar-cli | public | Java tool for performing annotation of VCF files | 2025-04-22 |
| ribodiff | public | No Summary | 2025-04-22 |
