| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ensembl-vep | public | Ensembl Variant Effect Predictor | 2025-09-26 |
| clustalo | public | Latest version of Clustal: a multiple sequence alignment program for DNA or proteins | 2025-09-26 |
| emboss | public | The European Molecular Biology Open Software Suite | 2025-09-26 |
| consel | public | CONSEL calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection | 2025-09-26 |
| kmc | public | Tools for efficient k-mer counting and filtering of reads based on k-mer content. | 2025-09-25 |
| snakemake | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-09-25 |
| snakemake-minimal | public | A popular workflow management system aiming at full in-silico reproducibility. | 2025-09-25 |
| egglib | public | Evolutionary Genetics and Genomics Library. EggLib is a C++/Python library and program package for evolutionary genetics and genomics. Main features are sequence data management, sequence polymorphism analysis, and coalescent simulations. EggLib is a flexible Python module with a performant underlying C++ library and allows fast and intuitive development of Python programs and scripts. | 2025-09-25 |
| gnuplot-py | public | No Summary | 2025-09-25 |
| soapdenovo2-gapcloser | public | a tool named GapCloser for SOAPdenovo. | 2025-09-25 |
| ngs-bits | public | Short-read sequencing tools. | 2025-09-25 |
| squid | public | Detector for fusion-gene and non-fusion-gene transcriptomic structural variations from RNA-seq data | 2025-09-24 |
| perl-module-corelist | public | What modules shipped with versions of perl. | 2025-09-24 |
| perl-test-inter | public | Framework for more readable interactive test scripts. | 2025-09-24 |
| imfusion | public | No Summary | 2025-09-24 |
| wgsim | public | No Summary | 2025-09-24 |
| tophat | public | A spliced read mapper for RNA-Seq. | 2025-09-24 |
| flash2 | public | Merge paired-end reads from fragments that are shorter than twice the read length | 2025-09-24 |
| squeakr | public | An Exact and Approximate k-mer Counting System. | 2025-09-24 |
| mira | public | MIRA is a whole genome shotgun and EST sequence assembler for Sanger, 454, Solexa (Illumina), IonTorrent data and PacBio (the later at the moment only CCS and error-corrected CLR reads). | 2025-09-24 |
| perl-sys-info-driver-osx | public | OSX driver for Sys::Info. | 2025-09-24 |
| hyphy | public | An open-source software package for comparative sequence analysis using stochastic evolutionary models. | 2025-09-24 |
| miranda | public | An algorithm for finding genomic targets for microRNAs | 2025-09-24 |
| ariba | public | ARIBA: Antibiotic Resistance Identification By Assembly. | 2025-09-23 |
| ra | public | Ra is short for RNA Assembler and it is a C++ implementation of an overlap-layout-consensus transcriptome assembler. | 2025-09-23 |
