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snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2025-08-29 |
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trimmomatic
|
public |
A flexible read trimming tool for Illumina NGS data.
|
2025-08-28 |
|
perl-datetime
|
public |
A date and time object for Perl.
|
2025-08-15 |
|
stringtie
|
public |
StringTie employs efficient algorithms for transcript structure recovery and abundance estimation from bulk RNA-Seq reads aligned to a reference genome.
|
2025-08-11 |
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gtotree
|
public |
GToTree is a user-friendly workflow for phylogenomics.
|
2025-08-06 |
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genometools-genometools
|
public |
GenomeTools genome analysis system.
|
2025-07-31 |
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perl-perlio-utf8_strict
|
public |
Fast and correct UTF-8 IO.
|
2025-07-24 |
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svtopovz
|
public |
Complex structural variant visualization for HiFi sequencing data: plotting tool.
|
2025-07-22 |
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htseq
|
public |
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
|
2025-07-21 |
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gffcompare
|
public |
GffCompare by Geo Pertea.
|
2025-07-15 |
|
htslib
|
public |
C library for high-throughput sequencing data formats.
|
2025-07-14 |
|
busco
|
public |
Assessment of assembly completeness using Universal Single Copy Orthologs.
|
2025-07-09 |
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bioconductor-data-packages
|
public |
A package to enable downloading and installation of Bioconductor data packages
|
2025-06-27 |
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trinity
|
public |
Trinity assembles transcript sequences from Illumina RNA-Seq data.
|
2025-06-19 |
|
bcftools
|
public |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.
|
2025-06-15 |
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perl-indirect
|
public |
Lexically warn about using the indirect method call syntax.
|
2025-06-13 |
|
bowtie2
|
public |
A fast and sensitive gapped read aligner.
|
2025-06-03 |
|
freebayes
|
public |
Bayesian haplotype-based polymorphism discovery and genotyping.
|
2025-06-02 |
|
bamtools
|
public |
C++ API & command-line toolkit for working with BAM data.
|
2025-05-18 |
|
flair
|
public |
Correction, isoform definition, and alternative splicing analysis of noisy reads (ONT and PacBio).
|
2025-05-07 |
|
pixelator
|
public |
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
|
2025-05-05 |
|
perl-html-parser
|
public |
HTML parser class
|
2025-04-24 |
|
r-spacexr
|
public |
Cell type identification and cell type-specific differential expression in spatial transcriptomics
|
2025-04-22 |
|
hmftools-virus-interpreter
|
public |
Post-process VIRUSBreakend summary results.
|
2025-04-22 |
|
ngscheckmate
|
public |
Software package for identifying next generation sequencing (NGS) data files from the same individual.
|
2025-04-22 |
