| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-alabaster.matrix | public | Load and Save Artifacts from File | 2025-10-15 |
| bioconductor-alabaster.base | public | Save Bioconductor Objects To File | 2025-10-15 |
| bioconductor-alabaster.spatial | public | Save and Load Spatial 'Omics Data to/from File | 2025-10-15 |
| nextstrain-cli | public | The Nextstrain command-line interface (CLI). | 2025-10-15 |
| svtyper-python3 | public | Bayesian genotyper for structural variants | 2025-10-15 |
| rsem | public | RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. | 2025-10-15 |
| bioconda-repodata-patches | public | Generate tweaks to index metadata, hosted separately from anaconda.org index. | 2025-10-15 |
| sansa | public | Structural variant annotation | 2025-10-14 |
| atol-qc-raw-shortread | public | Run short read QC on Hi-C or other Illumina reads. | 2025-10-14 |
| bcov | public | BCov is a software package designed for predicting protein beta-sheet topology from amino acid sequence. | 2025-10-14 |
| barriers | public | Compute local minima and energy barriers of a landscape. | 2025-10-14 |
| baypass | public | Genome-Wide Scan for Adaptive Differentiation and Association Analysis with population-specific covariables. | 2025-10-14 |
| bamhash | public | Hash BAM and FASTQ files to verify data integrity. | 2025-10-14 |
| bamcmp | public | Tools for deconvolving host and graft reads using full-length alignments and their scores. | 2025-10-14 |
| balrog | public | Balrog: A universal protein model for prokaryotic gene prediction | 2025-10-14 |
| pyprophet | public | PyProphet: Semi-supervised learning and scoring of OpenSWATH results. | 2025-10-14 |
| sylph | public | sylph quickly enables querying of genomes against even low-coverage shotgun metagenomes to find nearest neighbour ANI. | 2025-10-14 |
| sylph-tax | public | Integrating taxonomic information into the sylph metagenome profiler. | 2025-10-14 |
| rearr | public | Chimeric alignment of CRISPR-seq | 2025-10-14 |
| csubst | public | Tool for analyzing combinatorial codon substitutions in DNA sequences. | 2025-10-13 |
| ipcr | public | In-silico PCR with mismatch thresholds and pretty alignment output. | 2025-10-13 |
| bigscape | public | Biosynthetic Genes Similarity Clustering and Prospecting Engine. | 2025-10-13 |
| seqchromloader | public | Sequence and chromatin dataloader for deep learning. | 2025-10-13 |
| treesimulator | public | Simulation of rooted phylogenetic trees under a given Multitype Birth–Death (MTBD) model. | 2025-10-13 |
| atol-qc-raw-ont | public | Run read QC on ONT reads. | 2025-10-13 |
