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hyphy
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public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
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2025-08-28 |
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sawfish
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public |
Joint structural variant and copy number variant caller for HiFi sequencing data
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2025-08-28 |
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r-flanders
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public |
Fast colocalization using AnnData objects in R
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2025-08-28 |
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flexynesis
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public |
A deep-learning-based multi-omics bulk sequencing data integration suite with a focus on (pre-)clinical endpoint prediction.
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2025-08-28 |
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r-presto
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public |
Scalable implementation of the Wilcoxon rank sum test and auROC statistic. Interfaces to dense and sparse matrices, as well as genomics analysis frameworks Seurat and SingleCellExperiment.
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2025-08-28 |
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bioconda-repodata-patches
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public |
Generate tweaks to index metadata, hosted separately from anaconda.org index.
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2025-08-28 |
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coot-headless
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public |
Coot Headless API - Software for macromolecular model building.
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2025-08-28 |
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harpy
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public |
Process raw haplotagging data, from raw sequences to phased haplotypes.
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2025-08-28 |
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zol
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public |
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters.
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2025-08-27 |
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ena-webin-cli
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public |
Data submissions to ENA can be made using the Webin command line submission interface (Webin-CLI).
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2025-08-27 |
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allelecodes
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public |
Allele Code Assignment Algorithm for cgMLST schemes
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2025-08-27 |
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varpubs
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public |
Tool for finding PubMed evidence on genetic variants and generating LLM-based summaries
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2025-08-27 |
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artic
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public |
ARTIC pipeline - a bioinformatics pipeline for working with virus sequencing data sequenced with nanopore.
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2025-08-27 |
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pysradb
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public |
Python package for retrieving metadata and downloading datasets from SRA/ENA/GEO
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2025-08-27 |
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jcvi
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public |
Python utility libraries on genome assembly, annotation, and comparative genomics.
|
2025-08-27 |
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binchicken
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public |
Targeted recovery of low abundance metagenome assembled genomes through intelligent coassembly
|
2025-08-26 |
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seismic-rna
|
public |
SEISMIC-RNA software by the Rouskin Lab.
|
2025-08-26 |
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cagecleaner
|
public |
Genomic redundancy removal tool for cblaster hit sets.
|
2025-08-26 |
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probe
|
public |
Evaluate and visualize protein interatomic packing
|
2025-08-26 |
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pyani-plus
|
public |
Whole-genome classification of microbes using Average Nucleotide Identity and similar methods.
|
2025-08-26 |
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pyopenms
|
public |
Python bindings for OpenMS, an open-source software C++ library for LC-MS data management and analyses.
|
2025-08-26 |
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cats-rb
|
public |
Reference-based transcriptome assembly quality assessment tool.
|
2025-08-25 |
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cats-rf
|
public |
Reference-free transcriptome assembly quality assessment tool.
|
2025-08-25 |
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alignoth
|
public |
A tool for creating alignment plots from bam files.
|
2025-08-25 |
|
gubbins
|
public |
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
|
2025-08-25 |
