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muset
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public |
A pipeline for building an abundance unitig matrix from FASTA/FASTQ files
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2025-04-22 |
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ctyper
|
public |
Genotyping sequence-resolved copy-number variation using pangenomes.
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2025-04-22 |
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spp-dcj
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public |
A tool for solving the small parsimony problem for natural genomes
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2025-04-22 |
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a3partitioner
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public |
A bioinformatics tool for creating APOBEC3 and non-APOBEC3 partitions
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2025-04-22 |
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pb-cpg-tools
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public |
Collection of tools for the analysis of CpG data
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2025-04-22 |
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get_pangenes
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public |
A versatile software package for calling pangenes from whole genome alignments
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2025-04-22 |
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frag_gene_scan_rs
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public |
Rust implementation of the gene prediction model for short and error-prone reads
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2025-04-22 |
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autobigs-cli
|
public |
A CLI tool to rapidly fetch fetch MLST profiles given sequences for various diseases.
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2025-04-22 |
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autobigs-engine
|
public |
A library to rapidly fetch fetch MLST profiles given sequences for various diseases.
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2025-04-22 |
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nafcodec
|
public |
PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files.
|
2025-04-22 |
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kbo-cli
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public |
Command-line interface for the kbo local aligner
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2025-04-22 |
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grepq
|
public |
Quickly filter FASTQ files.
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2025-04-22 |
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eastr
|
public |
Tool for emending alignments of spuriously spliced transcript reads.
|
2025-04-22 |
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linkedsv
|
public |
A novel structural variant caller for 10X Genomics (linked-read) sequencing data
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2025-04-22 |
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ourotools
|
public |
A comprehensive toolkit for quality control and analysis of single-cell long-read RNA-seq data
|
2025-04-22 |
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biobb_morph
|
public |
biobb_morph is the Biobb module collection to perform molecular dynamics simulations using the morph MD suite.
|
2025-04-22 |
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qimba
|
public |
Toolkit for metabarcoding analyses
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2025-04-22 |
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geomloss
|
public |
Geometric loss functions between point clouds, images and volumes.
|
2025-04-22 |
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memopair
|
public |
A package for identifying methylated motif pairs
|
2025-04-22 |
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snakebids
|
public |
BIDS integration into snakemake workflows
|
2025-04-22 |
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seg-suite
|
public |
The seg suite provides tools for manipulating segments, alignments, and annotations of sequences.
|
2025-04-22 |
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msoma
|
public |
mSOMA: Somatic Mutation Detection using a betabinomial null model
|
2025-04-22 |
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glean-gene
|
public |
GLEAN is an unsupervised learning system to integrate disparate sources of gene structure evidence (gene model predictions, EST/protein genomic sequence alignments, SAGE/peptide tags, etc) to produce a consensus gene prediction, without prior training.
|
2025-04-22 |
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r-scroshi
|
public |
scROSHI: robust supervised hierarchical identification of single cells
|
2025-04-22 |
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pylipid
|
public |
PyLipID - A Python Library For Lipid Interaction Analysis
|
2025-04-22 |
