| Package Name | Access | Summary | Updated |
|---|---|---|---|
| regtools | public | Tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context. | 2025-05-03 |
| subread | public | High-performance read alignment, quantification, and mutation discovery. | 2025-05-03 |
| oligon-design | public | Simple and versatile approach to design specific oligonucleotides from large environmental datasets | 2025-05-03 |
| recur | public | Detect recurrent amino-acid substitutions from multiple-sequence alignments. | 2025-05-02 |
| kernel_density_plots | public | Python tool for generating SNP density and closest neighbor plots from aligned SNP FASTA files. | 2025-05-02 |
| bioconductor-structtoolbox | public | Data processing & analysis tools for Metabolomics and other omics | 2025-05-02 |
| frogs | public | FROGS is a workflow designed to metabarcoding sequence analysis | 2025-05-02 |
| aniclustermap | public | A tool for drawing ANI clustermap between all-vs-all microbial genomes | 2025-05-02 |
| mogaaap | public | MoGAAAP: Modular Genome Assembly, Annotation and quality Assessment Pipeline | 2025-05-02 |
| viguno | public | Lookup OMIM genes and HPO terms and compute similarities. | 2025-05-02 |
| varfish-server-worker | public | Rust-based tool for the heavy lifting in varfish-server. | 2025-05-02 |
| sneep | public | Identify regulatory non-coding SNPs (rSNPs) | 2025-05-02 |
| pipits | public | PIPITS: An automated pipeline for analyses of fungal internal transcribed spacer (ITS) sequences from the Illumina sequencing platform. | 2025-05-02 |
| svtk | public | Utilities for consolidating, filtering, resolving, and annotating structural variants. | 2025-04-30 |
| bioconductor-pics | public | Probabilistic inference of ChIP-seq | 2025-04-30 |
| bioconductor-switchbox | public | Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm | 2025-04-30 |
| bioconductor-adsplit | public | Annotation-Driven Clustering | 2025-04-30 |
| bioconductor-gcrma | public | Background Adjustment Using Sequence Information | 2025-04-30 |
| bioconductor-beadarray | public | Quality assessment and low-level analysis for Illumina BeadArray data | 2025-04-30 |
| bioconductor-ternarynet | public | Ternary Network Estimation | 2025-04-30 |
| bioconductor-makecdfenv | public | CDF Environment Maker | 2025-04-30 |
| bioconductor-microrna | public | Data and functions for dealing with microRNAs | 2025-04-30 |
| bioconductor-netpathminer | public | NetPathMiner for Biological Network Construction, Path Mining and Visualization | 2025-04-30 |
| bioconductor-messina | public | Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems | 2025-04-30 |
| bioconductor-sincell | public | R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data | 2025-04-30 |
