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marbel
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public |
Marbel generates realistic in silico metatranscriptomic dataset based on specified parameters.
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2025-06-06 |
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emboss
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public |
The European Molecular Biology Open Software Suite
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2025-06-06 |
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bcalm
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public |
BCALM 2 is a bioinformatics tool for constructing the compacted de Bruijn graph from sequencing data.
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2025-06-06 |
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gfatools
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public |
Tools for manipulating sequence graphs in the GFA and rGFA formats.
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2025-06-06 |
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flexidot
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public |
Flexible dotplotting of genomic sequences.
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2025-06-06 |
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bcftools-gtc2vcf-plugin
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public |
Tools to convert Illumina and Affymetrix array intensity data files into VCF files.
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2025-06-06 |
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hmftools-bwa-plus
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public |
bwa-mem with extensions for WiGiTS
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2025-06-06 |
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amalgkit
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public |
Tools for transcriptome amalgamation
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2025-06-06 |
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phylogenize
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public |
Phylogenize is a tool that allows users to link microbial genes to environments, accounting for phylogeny.
|
2025-06-06 |
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uchime
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public |
UCHIME2 is an algorithm for detecting chimeric sequences.
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2025-06-06 |
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moabs
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public |
Methylation analysis on Bisulfite-Sequencing reads
|
2025-06-05 |
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phynteny_transformer
|
public |
Phynteny: Synteny-based prediction of bacteriophage genes.
|
2025-06-05 |
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perl-file-find-rule
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public |
Alternative interface to File::Find.
|
2025-06-05 |
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hicberg
|
public |
Statistical profiling based tool for contact data (Hi-C, ChIA-PET, Capture-C, etc.) and genomics data reconstruction
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2025-06-05 |
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pacini_typing
|
public |
YAML-based bacterial genotyping application
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2025-06-05 |
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virulencefinder
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public |
VirulenceFinder identifies virulence genes in total or partial sequenced isolates of bacteria
|
2025-06-05 |
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pasta
|
public |
An implementation of the PASTA (Practical Alignment using Sate and TrAnsitivity) algorithm.
|
2025-06-05 |
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giatools
|
public |
Tools required for Galaxy Image Analysis
|
2025-06-05 |
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metaphlan
|
public |
Metagenomic Phylogenetic Analysis.
|
2025-06-04 |
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pretextsnapshot
|
public |
Commandline image generator for Pretext Hi-C genome contact maps.
|
2025-06-04 |
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bowtie2
|
public |
A fast and sensitive gapped read aligner.
|
2025-06-03 |
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samrefiner
|
public |
A program for gathering variant information from a SAM formated files.
|
2025-06-03 |
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r-tmae
|
public |
Tests and visualizations for mono-allelicly expressed variants.
|
2025-06-03 |
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bcftools-liftover-plugin
|
public |
Tools to work with GWAS-VCF summary statistics files (liftover plugin only)
|
2025-06-03 |
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k8
|
public |
Lightweight JavaScript shell based on Google's V8 JavaScript engine
|
2025-06-03 |
