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ucsc-twobitinfo
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public |
Get information about sequences in a .2bit file.
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2025-06-19 |
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ucsc-fatotwobit
|
public |
Convert DNA from fasta to 2bit format.
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2025-06-19 |
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ucsc-twobittofa
|
public |
Convert all or part of .2bit file to fasta.
|
2025-06-19 |
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hostile
|
public |
Hostile: accurate host decontamination
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2025-06-19 |
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biobb_amber
|
public |
Biobb_amber is a BioBB category for AMBER MD package.
|
2025-06-19 |
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r-recetox-waveica
|
public |
Removal of batch effects for large-scale untargeted metabolomics data based on wavelet transform.
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2025-06-19 |
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trinity
|
public |
Trinity assembles transcript sequences from Illumina RNA-Seq data.
|
2025-06-19 |
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libccp4
|
public |
Protein X-ray crystallography toolkit.
|
2025-06-19 |
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ucsc-bedtobigbed
|
public |
Convert bed file to bigBed. (BigBed version: 4)
|
2025-06-19 |
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hymet2
|
public |
HYMET (Hybrid Metagenomic Tool) for taxonomic identification of metagenomic sequences.
|
2025-06-19 |
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ppx
|
public |
A Python interface to proteomics data repositories
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2025-06-19 |
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blastn2dotplots
|
public |
A script for visualizing multiple dot-plot alignments from BLASTN output.
|
2025-06-19 |
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perl-json-create
|
public |
fast, minimal, UTF-8-only serialization of data to JSON
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2025-06-19 |
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yacht
|
public |
YACHT is a mathematically rigorous hypothesis test for the presence or absence of organisms in a metagenomic sample, based on average nucleotide identity (ANI).
|
2025-06-19 |
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cvlr
|
public |
Clustering and Visualization of Long Reads
|
2025-06-19 |
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fastq_utils
|
public |
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
|
2025-06-18 |
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bioblend
|
public |
A Python library for interacting with the Galaxy API.
|
2025-06-18 |
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civicpy
|
public |
CIViC variant knowledgebase analysis toolkit.
|
2025-06-18 |
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sra-tools
|
public |
The SRA Toolkit and SDK from NCBI.
|
2025-06-18 |
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easel
|
public |
Easel is an ANSI C code library for computational analysis of biological sequences using probabilistic models.
|
2025-06-18 |
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r-isogene
|
public |
Offers framework for testing for monotonic relationship between gene expression and doses in a microarray experiment. Several testing procedures including the global likelihood-ratio test (Bartholomew, 1961), Williams (1971, 1972), Marcus (1976), M (Hu et al. 2005) and the modified M (Lin et al. 2007) are used to test for the monotonic trend in gene expression with respect to doses. BH (Benjamini and Hochberg 1995) and BY (Benjamini and Yekutieli 2004) FDR controlling procedures are applied to adjust the raw p-values obtained from the permutations.
|
2025-06-18 |
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msi
|
public |
Metabarcoding sequences identification - from nanopore reads to taxa tables.
|
2025-06-18 |
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lotus3
|
public |
LotuS3 is a lightweight amplicon sequencing pipeline supporting 16S/18S/ITS
|
2025-06-18 |
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perl-xml-libxml
|
public |
Interface to Gnome libxml2 xml parsing and DOM library
|
2025-06-18 |
|
poppunk
|
public |
PopPUNK (POPulation Partitioning Using Nucleotide Kmers)
|
2025-06-18 |
