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hmftools-sage
|
public |
SAGE is a somatic SNV, MNV and small INDEL caller optimised 100x tumor / 40x normal coverage, but has a flexible set of filters that can be adapted to lower or higher depth coverage.
|
2025-07-21 |
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hmftools-linx
|
public |
LINX is an annotation, interpretation and visualisation tool for structural variants.
|
2025-07-21 |
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hmftools-purple
|
public |
PURPLE is a purity ploidy estimator for tumor samples.
|
2025-07-21 |
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hmftools-bam-tools
|
public |
Rapidly process BAMs for various tasks.
|
2025-07-21 |
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hmftools-amber
|
public |
Generates a tumor BAF file for use in PURPLE.
|
2025-07-21 |
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piscem-infer
|
public |
piscem-infer is a flexible tool to perform target quantification from bulk-sequencing data
|
2025-07-20 |
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pydustmasker
|
public |
Python library for identification and masking of low-complexity regions in nucleotide sequences.
|
2025-07-19 |
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bygul
|
public |
Bygul is an amplicon read simulating tool that can generate different sample read proportions based on user input.
|
2025-07-18 |
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scispacy
|
public |
A full SpaCy pipeline and models for scientific/biomedical documents.
|
2025-07-18 |
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pyfastx
|
public |
pyfastx is a python module for fast random
access to sequences from plain and gzipped
FASTA/Q file
|
2025-07-18 |
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pyrodigal
|
public |
Python bindings to Prodigal, an ORF finder for microbial sequences.
|
2025-07-18 |
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pyhmmer
|
public |
Cython bindings and Python interface to HMMER3.
|
2025-07-18 |
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hal2vg
|
public |
A tool for converting from hal to vg format, as well as other tools generally useful for cactus.
|
2025-07-18 |
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gb_taxonomy_tools
|
public |
These are four simple utilities which perform certain manipulations and visualization tasks on GenBank taxonomic information.
|
2025-07-18 |
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d4binding
|
public |
The C/C++ binding for the D4 file format.
|
2025-07-18 |
|
metanovo
|
public |
Produce targeted databases for mass spectrometry analysis.
|
2025-07-18 |
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ccp4srs
|
public |
CCP4 Storage, Retrieval and Search framework for small-molecule data
|
2025-07-18 |
|
pupmapper
|
public |
Tool & python package for calculating genome wide pileup mappability.
|
2025-07-18 |
|
breakinator
|
public |
Detection of foldback and chimeric read artifacts in PAF files
|
2025-07-18 |
|
r-erah
|
public |
Automated compound deconvolution, alignment across samples, and identification of metabolites by spectral library matching in Gas Chromatography - Mass spectrometry (GC-MS) untargeted metabolomics.
|
2025-07-18 |
|
vcf-validator
|
public |
EBI EVA - Validation tool for VCF file format compliance
|
2025-07-18 |
|
mosdepth
|
public |
Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing.
|
2025-07-18 |
|
bactopia-py
|
public |
A Python package for working with Bactopia.
|
2025-07-17 |
|
cenote-taker3
|
public |
Cenote-Taker 3: Discover and annotate the virome.
|
2025-07-17 |
|
bioconductor-lpsymphony
|
public |
Symphony integer linear programming solver in R
|
2025-07-17 |
