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ucsc-checkhgfindspec
|
public |
Test and describe search specs in hgFindSpec tables.
|
2025-06-29 |
|
ucsc-fatotab
|
public |
Convert fa file to tab separated file.
|
2025-06-29 |
|
ucsc-subcolumn
|
public |
Substitute one column in a tab-separated file.
|
2025-06-29 |
|
ucsc-fapolyasizes
|
public |
Get poly A sizes.
|
2025-06-29 |
|
ucsc-fanoise
|
public |
Add noise to .fa file.
|
2025-06-29 |
|
ucsc-nettobed
|
public |
Convert target coverage of net to a bed file.
|
2025-06-29 |
|
ucsc-fatofastq
|
public |
Convert fa to fastq format, just faking quality values.
|
2025-06-29 |
|
ucsc-checktablecoords
|
public |
Check invariants on genomic coords in table(s).
|
2025-06-29 |
|
ucsc-netclass
|
public |
Add classification info to net.
|
2025-06-29 |
|
ucsc-chromgraphtobin
|
public |
Make binary version of chromGraph.
|
2025-06-29 |
|
ucsc-mafgene
|
public |
Output protein alignments using maf and genePred.
|
2025-06-29 |
|
ucsc-bigwigcorrelate
|
public |
Correlate bigWig files, optionally only on target regions.
|
2025-06-29 |
|
ucsc-mafsinregion
|
public |
Extract MAFS in a genomic region.
|
2025-06-29 |
|
ucsc-mafsplitpos
|
public |
Pick positions to split multiple alignment input files.
|
2025-06-29 |
|
ucsc-taillines
|
public |
Add tail to each line of file.
|
2025-06-29 |
|
ucsc-hgloadchain
|
public |
Load a generic Chain file into database.
|
2025-06-29 |
|
ucsc-mafranges
|
public |
Extract ranges of target (or query) coverage from maf and.
|
2025-06-29 |
|
ucsc-chromgraphfrombin
|
public |
Convert chromGraph binary to ascii format.
|
2025-06-29 |
|
ucsc-matrixtobarchartbed
|
public |
Attach a labeled expression matrix to a bed file joining.
|
2025-06-29 |
|
ucsc-getrnapred
|
public |
Get virtual RNA for gene predictions.
|
2025-06-29 |
|
ucsc-catuncomment
|
public |
Concatenate input removing lines that start with '#'.
|
2025-06-29 |
|
ucsc-chopfalines
|
public |
Read in FA file with long lines and rewrite it with shorter lines.
|
2025-06-29 |
|
ucsc-hgsqldump
|
public |
Execute mysqldump using passwords from .hg.conf.
|
2025-06-29 |
|
ucsc-hgloadmaf
|
public |
Load a maf file index into the database.
|
2025-06-29 |
|
ucsc-getrna
|
public |
Get mrna for GenBank or RefSeq sequences found in a database.
|
2025-06-29 |
