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ucsc-farandomize
|
public |
Program to create random fasta records.
|
2025-06-29 |
|
ucsc-maftopsl
|
public |
Convert maf to psl format.
|
2025-06-29 |
|
ucsc-mafmefirst
|
public |
Move component to top if it is one of the named ones.
|
2025-06-29 |
|
ucsc-qatoqac
|
public |
Convert from uncompressed to compressed.
|
2025-06-29 |
|
ucsc-genepredfilter
|
public |
Filter a genePred file.
|
2025-06-29 |
|
ucsc-qactoqa
|
public |
Convert from compressed to uncompressed.
|
2025-06-29 |
|
ucsc-linestora
|
public |
Generate .ra format from lines with pipe-separated fields.
|
2025-06-29 |
|
ucsc-hgfakeagp
|
public |
Create fake AGP file by looking at N's.
|
2025-06-29 |
|
ucsc-parasync
|
public |
Uses paraFetch to recursively mirror url to given path.
|
2025-06-29 |
|
ucsc-coltransform
|
public |
Add and/or multiply column by constant.
|
2025-06-29 |
|
ucsc-fastqstatsandsubsample
|
public |
Go through a fastq file doing sanity checks and collecting stats.
|
2025-06-29 |
|
ucsc-sqltoxml
|
public |
Dump out all or part of a relational database to XML, guided.
|
2025-06-29 |
|
ucsc-htmlcheck
|
public |
Do a little reading and verification of html file.
|
2025-06-29 |
|
ucsc-mktime
|
public |
Convert date string to unix timestamp.
|
2025-06-29 |
|
ucsc-mafaddirows
|
public |
Add 'i' rows to a maf.
|
2025-06-29 |
|
ucsc-crtreesearchbed
|
public |
Search a crTree indexed bed file and print all items that overlap query.
|
2025-06-29 |
|
ucsc-hgbbidblink
|
public |
Add table that just contains a pointer to a bbiFile to database. This program.
|
2025-06-29 |
|
ucsc-dbtrash
|
public |
Drop tables from a database older than specified N hours.
|
2025-06-29 |
|
ucsc-netsplit
|
public |
Split a genome net file into chromosome net files.
|
2025-06-29 |
|
ucsc-mafaddqrows
|
public |
Add quality data to a maf.
|
2025-06-29 |
|
ucsc-fastqtofa
|
public |
Convert from fastq to fasta format.
|
2025-06-29 |
|
ucsc-crtreeindexbed
|
public |
Create an index for a bed file.
|
2025-06-29 |
|
ucsc-liftup
|
public |
Change coordinates of .psl, .agp, .gap, .gl, .out, .align, .gff, .gtf.
|
2025-06-29 |
|
ucsc-hgtrackdb
|
public |
Create trackDb table from text files.
|
2025-06-29 |
|
ucsc-fafiltern
|
public |
Get rid of sequences with too many N's.
|
2025-06-29 |
