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spliced_bam2gff
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public |
A tool to convert spliced BAM alignments into GFF2 format
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2023-06-16 |
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gamma
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public |
Tool for Gene Allele Mutation Microbial Assessment
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2023-06-16 |
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variantmap
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public |
Interactive heatmap for multi-sample structural variant analysis
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2023-06-16 |
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predicthaplo
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public |
This software aims at reconstructing haplotypes from next-generation sequencing data.
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2023-06-16 |
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knot-asm-analysis
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public |
KNOT: Knowledge Network Overlap exTraction is a tool for the investigation of fragmented long read assemblies.
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2023-06-16 |
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conduit-assembler
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public |
Long- and short-read hybrid de novo transcriptome assembly
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2023-06-16 |
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qax
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public |
Extract data, metadata, bibliography and provenance from Qiime2 artifacts
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2023-06-16 |
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correlationplus
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public |
A Python package to calculate, visualize and analyze dynamical correlations of proteins.
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2023-06-16 |
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gem2
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public |
GEM2 is a high-performance mapping tool. It also provide a unique tool to evaluate mappability.
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2023-06-16 |
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bioconductor-biggr
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public |
Constraint based modeling in R using metabolic reconstruction databases
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2023-06-16 |
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appspam
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public |
Alignment-free Phylogenetic Placement algorithm based on Spaced-word Matches
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2023-06-16 |
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krakmeopen
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public |
A Kraken 2 downstream analysis toolkit. Calculate quality metrics for Kraken 2 classifications.
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2023-06-16 |
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submission-tool-validator
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public |
This tool helps user to validate submissions in the client side before submitting to PRIDE.
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2023-06-16 |
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panacota
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public |
Large scale comparative genomics tools: annotate genomes, do pangenome, core/persistent genome, align core/persistent families, infer phylogenetic tree.
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2023-06-16 |
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mirge-build
|
public |
miRge-build: Building libraries of small RNA sequencing Data
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2023-06-16 |
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bioconductor-cytotree
|
public |
A Toolkit for Flow And Mass Cytometry Data
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2023-06-16 |
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mirge3
|
public |
Comprehensive analysis of small RNA sequencing Data
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2023-06-16 |
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bioconductor-hcamatrixbrowser
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public |
Extract and manage matrix data from the Human Cell Atlas project
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2023-06-16 |
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bioconductor-msstatstmtptm
|
public |
Post Translational Modification (PTM) Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
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2023-06-16 |
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bioconductor-brainsaber
|
public |
Brain Span Atlas in Biobase Expressionset R toolset
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2023-06-16 |
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bioconductor-mseadbi
|
public |
DBI to construct MSEA-related package
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2023-06-16 |
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bioconductor-gcsfilesystem
|
public |
Mounting a Google Cloud bucket to a local directory
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2023-06-16 |
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perl-fast
|
public |
FAST Analysis of Sequences Toolbox
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2023-06-16 |
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perl-sort-key
|
public |
the fastest way to sort anything in Perl
|
2023-06-16 |
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kerneltree
|
public |
Ultrafast interval tree implementation stolen from the kernel, modified and wrapped for Python.
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2023-06-16 |
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quip
|
public |
Aggressive compression of FASTQ and SAM/BAM files.
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2023-06-16 |
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cliquesnv
|
public |
Scalable Reconstruction of Intra-Host Viral Populations from NGS Reads
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2023-06-16 |
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unitem
|
public |
Ensemble binning strategies for combining the output of multiple binning methods.
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2023-06-16 |
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perl-sort-mergesort
|
public |
Merge sorted streams to create a new stream
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2023-06-16 |
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msi
|
public |
Metabarcoding sequences identification - from nanopore reads to taxa tables.
|
2023-06-16 |
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ifeature
|
public |
A python package for feature extraction and selection from protein and peptide sequences
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2023-06-16 |
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burst
|
public |
BURST (formerly known as embalmer) is an optimal, high-speed pairwise sequence aligner specialized in aligning many NGS short reads against large reference databases.
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2023-06-16 |
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snakelines
|
public |
Computational pipelines for processing of paired-end sequencing reads.
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2023-06-16 |
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sat-bsa
|
public |
Sat-BSA is a package used for applying local de novo assembly and identifying the structural variants in the assembled region
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2023-06-16 |
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bolt-lmm
|
public |
Efficient large cohorts genome-wide Bayesian mixed-model association testing
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2023-06-16 |
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fanc
|
public |
Framework for the ANalysis of C-data.
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2023-06-16 |
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md-cogent
|
public |
COding GENome reconstruction Tool using transcript sequences
|
2023-06-16 |
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porfast
|
public |
Extract ORFs from paired end Illumina reads (FASTQ).
|
2023-06-16 |
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lukasa
|
public |
Fast and accurate mapping of proteins against eukaryotic genomes
|
2023-06-16 |
|
idemux
|
public |
A Lexogen tool for demultiplexing and index error correcting fastq files. Works with Lexogen i7, i5 and i1 barcodes.
|
2023-06-16 |
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pyhalcyon
|
public |
Halcyon: an accurate basecaller exploiting an encoder-decoder model with monotonic attention
|
2023-06-16 |
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samwell
|
public |
Useful utilities for biological data formats and analyses
|
2023-06-16 |
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vsclust
|
public |
Interactive tool for statistical testing, data browsing and interactive visualization of quantitative omics data
|
2023-06-16 |
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papaa
|
public |
PAPAA tools to measure mutation specific pathway acitvity in TCGA pancancer dataset
|
2023-06-16 |
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cryptogenotyper
|
public |
This package crypto_typer: tool to subtype the parasite, Cryptosporidium, based on the 18S and gp60 markers.
|
2023-06-16 |
|
seqiolib
|
public |
Library to read, write sequence, variants, regions to use them for training of machine learning algorithms.
|
2023-06-16 |
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mmult
|
public |
Multiple sample analysis from large-scale WGBS data
|
2023-06-16 |
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pm4ngs
|
public |
PM4NGS generates a standard organizational structure for Next Generation Sequencing (ngs) data analysis
|
2023-06-16 |
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plasmidhawk
|
public |
Plasmidhawk is a program for detecting lab-of-origin of input plasmids by building an annotated pangenome of training plasmids.
|
2023-06-16 |
|
ope
|
public |
Tools for gnu-parallel with FASTA input and parsers for some common formats.
|
2023-06-16 |
