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deepdirect
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public |
In silico approach to generate mutations for protein complexes towards a specified direction (increase/decrease) in binding affinity.
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2023-10-18 |
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t1dgrs2
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public |
Generate a Type 1 Diabetes Genetic Risk Score (T1D GRS) that accounts for interactions between HLA DR-DQ risk haplotypes.
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2023-10-18 |
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nii2dcm
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public |
nii2dcm: NIfTI to DICOM creation with Python
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2023-10-18 |
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cromshell
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public |
Command-line interface to the Cromwell workflow manager
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2023-10-17 |
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fcsparser
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public |
A python package for reading raw fcs files
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2023-10-17 |
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snpsift
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public |
Toolbox that allows you to filter and manipulate annotated files
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2023-10-17 |
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fiji-morpholibj
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public |
MorphoLibJ is a collection of mathematical morphology methods and plugins for ImageJ, created at INRA-IJPB Modeling and Digital Imaging lab.
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2023-10-16 |
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rabies
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public |
RABIES: Rodent Automated Bold Improvement of EPI Sequences.
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2023-10-15 |
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corgi
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public |
Classifier for ORganelle Genomes Inter alia
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2023-10-14 |
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scrnasim-toolz
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public |
Tools used by scRNAsim workflow.
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2023-10-14 |
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fastagap
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public |
Count and remove missing data in fasta-formatted sequence data
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2023-10-12 |
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neoloop
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public |
Predict neo-loops induced by structural variations
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2023-10-12 |
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varfish-annotator-cli
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public |
Annotate variants for import into VarFish Server.
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2023-10-11 |
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tadlib
|
public |
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
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2023-10-11 |
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seqstr
|
public |
Lightweight tool to compile simple string input into long genomic sequences
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2023-10-11 |
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rrmscorer
|
public |
RRMScorer (RRM-RNA score predictor) predicts how likely a single RRM is to bind ssRNA
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2023-10-10 |
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pythoncyc
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public |
A Python interface to Pathway Tools, 2019 update
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2023-10-10 |
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phytest
|
public |
Quality control for phylogenetic pipelines using pytest
|
2023-10-10 |
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kosudoku
|
public |
kosudoku: a suite to rapidly create whole genome knockout collections for microorganisms
|
2023-10-08 |
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asciigenome
|
public |
Command-line genome browser running from terminal window and solely based on ASCII characters
|
2023-10-08 |
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scanorama
|
public |
Panoramic stitching of heterogeneous single-cell transcriptomic data
|
2023-10-08 |
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noise2read
|
public |
Turn noise to read
|
2023-10-07 |
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biocantor
|
public |
Coordinate Maniuplation and Genome Annotation Data Model
|
2023-10-07 |
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cascade-config
|
public |
Cascading configuration from the CLI and config files.
|
2023-10-06 |
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hafez
|
public |
A tool for identifying active prophage elements through read mapping
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2023-10-04 |
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ksw
|
public |
Ksw: (interactive) smith-waterman in C
|
2023-10-04 |
|
sem
|
public |
A nucleosome calling package for nucleosome subtype detection
|
2023-10-04 |
|
actc
|
public |
PacBio utility to align clr to ccs reads
|
2023-10-04 |
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svjedi-graph
|
public |
SVJedi-graph is a structural variation (SV) genotyper for long read data using a variation graph to represent SVs.
|
2023-10-04 |
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bactopia-sketcher
|
public |
Methods used by Bactopia for minmer sketching
|
2023-10-03 |
|
ice-cream
|
public |
ICEcream: Integrative and Conjugative Elements Classification and gRaphical gEne Arrangement Method
|
2023-10-03 |
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sequip
|
public |
Perl module for biological sequence analysis and supporting utilities..
|
2023-10-03 |
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demultiplexer
|
public |
python tool to demultiplex illumina reads tagged with the leeselab tagging scheme
|
2023-10-03 |
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lrtk
|
public |
This is a unified and versatile ToolKit for analyzing Linked-Read sequencing data.
|
2023-10-02 |
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galaxyxml
|
public |
Galaxy XML generation library
|
2023-10-02 |
|
pyjaspar
|
public |
pyJASPAR: a serverless interface to Biopython to access different versions of JASPAR database
|
2023-09-27 |
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perl-fastx-reader
|
public |
FASTX::Reader, Perl module to parse FASTA and FASTQ files
|
2023-09-26 |
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metaprokka
|
public |
A fork of Prokka using Prodigal-GV for phage annotation and metagenome/metavirome tweaks
|
2023-09-26 |
|
ribotish
|
public |
Ribo TIS Hunter (Ribo-TISH) identifies translation activities using ribosome profiling data.
|
2023-09-25 |
|
prokka
|
public |
Rapid annotation of prokaryotic genomes
|
2023-09-23 |
|
go-figure
|
public |
GO-Figure! offers a simple solution for command-line plotting of informative summary visualisations of lists of GO terms, designed to support exploratory data analyses and multiple dataset comparisons.
|
2023-09-23 |
|
r-metablastr
|
public |
The metablastr package harnesses the power of BLAST by providing interface functions between it and R.
|
2023-09-22 |
|
aquamis
|
public |
AQUAMIS is a snakemake pipeline for routine assembly and quality assessment of microbial isolate sequencing experiments.
|
2023-09-20 |
|
nanoget
|
public |
Functions to extract information from Oxford Nanopore sequencing data and alignments.
|
2023-09-19 |
|
cherri
|
public |
Accurate detection of functional RNA-RNA Interactions sites
|
2023-09-19 |
|
opentargets-validator
|
public |
Evidence validation at targetvalidation.org
|
2023-09-19 |
|
r-mixkernel
|
public |
Kernel-based methods are powerful methods for integrating heterogeneous types of data. mixKernel aims at providing methods to combine kernel for unsupervised exploratory analysis. Different solutions are provided to compute a meta-kernel, in a consensus way or in a way that best preserves the original topology of the data. mixKernel also integrates kernel PCA to visualize similarities between samples in a non linear space and from the multiple source point of view. Functions to assess and display important variables are also provided in the package. Jerome Mariette and Nathalie Villa-Vialaneix (2017) <doi:10.1093/bioinformatics/btx682>.
|
2023-09-18 |
|
verticall
|
public |
A tool for building recombination-free trees
|
2023-09-18 |
|
hifieval
|
public |
Evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads)
|
2023-09-18 |
|
solote
|
public |
A conversion utility is conveniently packaged with SoloTE, in order to tranform the RepeatMasker out file to the BED format required by SoloTE
|
2023-09-18 |
