| Package Name | Access | Summary | Updated |
|---|---|---|---|
| sourcepredict | public | Classification and prediction of the origin of metagenomic samples. | 2025-04-22 |
| cellsnake | public | cellsnake, a user-friendly tool for single cell RNA sequencing analysis | 2025-04-22 |
| samcut | public | samcut is `cut` for sam. Select (cut) columns from the output of `samtools view` using human-readale field names. | 2025-04-22 |
| superdsm | public | SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond. | 2025-04-22 |
| pbfusion | public | Fusion gene detection tool for PacBio Iso-Seq data | 2025-04-22 |
| pyctv_taxonomy | public | pyctv_taxonomy: download and use the ICTV Virus Metadata Resource | 2025-04-22 |
| milonga | public | MiLongA - A snakemake workflow for Microbial Long-read Assembly | 2025-04-22 |
| drprg | public | Drug resistance prediction with reference graphs | 2025-04-22 |
| brooklyn_plot | public | Gene co-expression and transcriptional bursting pattern recognition tool in single cell/nucleus RNA-sequencing data | 2025-04-22 |
| qiskit-xyz2pdb | public | qiskit-xyz2pdb | 2025-04-22 |
| ffgc | public | Family Free Genome Comparison (FFGC) workflow | 2025-04-22 |
| bamstats | public | A command line tool to compute mapping statistics from a BAM file | 2025-04-22 |
| viralflye | public | viralFlye is a pipeline to recover high-quality viral genomes from long-read metagenomic sequencing. | 2025-04-22 |
| varvamp | public | Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses. | 2025-04-22 |
| fastquast | public | Fast and simple Quality Assessment Tool for Large Genomes | 2025-04-22 |
| core-snp-filter | public | Filtering sites (i.e. columns) in a FASTA-format whole-genome pseudo-alignment. | 2025-04-22 |
| ncbi-fcs-gx | public | The NCBI Foreign Contamination Screen. Genomic cross-species aligner, for contamination detection. | 2025-04-22 |
| maast | public | Microbial agile accurate SNP Typer | 2025-04-22 |
| quicksnp | public | A python script to quickly build a Neighbor Joining tree using only a SNP distance matrix. | 2025-04-22 |
| fiji-simple_omero_client | public | Java library to simplify API to put/get objects on an OMERO server from Fiji/ImageJ. | 2025-04-22 |
| samestr | public | SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles. | 2025-04-22 |
| pyham | public | A tool to analyse Hierarchical Orthologous Groups (HOGs) | 2025-04-22 |
| pastrami | public | Pastrami is a novel, scalable computational algorithm for rapid human ancestry estimation. | 2025-04-22 |
| lja | public | La Jolla Assembler(LJA) - tool for genome assembly from PacBio HiFI reads based on de Bruijn graphs | 2025-04-22 |
| zarp | public | User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline | 2025-04-22 |
