| Package Name | Access | Summary | Updated |
|---|---|---|---|
| decoupler | public | Ensemble of methods to infer biological activities from omics data | 2025-04-22 |
| r-crbhits | public | CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R. | 2025-04-22 |
| namfinder | public | Finds Non-overlapping Approximate Matches (NAMs) between query and reference sequences using strobemers | 2025-04-22 |
| mkdesigner | public | Genome-wide design of markers for PCR-based genotyping from NGS data. | 2025-04-22 |
| table2asn | public | table2asn is a command-line program that creates sequence records for submission to GenBank - replaces tbl2asn. | 2025-04-22 |
| viromeqc | public | Provides an enrichment score for VLP viromes with respect to metagenomes | 2025-04-22 |
| seqfold | public | Predict the minimum free energy and structure of nucleic acids. | 2025-04-22 |
| derna | public | RNA sequence design for a target protein sequence. | 2025-04-22 |
| saccharis | public | A CAZyme discovery tool. Easily create phylogenetic trees from FASTA files and CAZyme families. | 2025-04-22 |
| acdc | public | (a)utomated (c)ontamination (d)etection and (c)onfidence estimation for single-cell genome data | 2025-04-22 |
| chromograph | public | Chromograph is a python package to create PNG images from genetics data such as BED and WIG files. | 2025-04-22 |
| tksm | public | Very modular, very cool long-read transcriptomic simulator | 2025-04-22 |
| gfflu | public | Annotate Influenza A virus gene segment sequences and output GFF3 files. | 2025-04-22 |
| naibr-plus | public | Identify novel adjacencies created by structural variations using linked-read data | 2025-04-22 |
| vcf2circos | public | A python package based on Plotly to help generate Circos plots from a VCF file or a JSON configuration file. | 2025-04-22 |
| perl-bio-bpwrapper | public | Bio::BPWrapper -- command-line utilities for Bio::Perl | 2025-04-22 |
| isoseq | public | Iso-Seq - Scalable De Novo Isoform Discovery | 2025-04-22 |
| tciaclient | public | TCIA (The Cancer Imaging Archive) Download Client for Python | 2025-04-22 |
| odamnet | public | Study molecular relationships between chemicals and rare diseases | 2025-04-22 |
| metabuli | public | Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid | 2025-04-22 |
| repic | public | REPIC - an ensemble learning approach to cryo-EM particle picking. | 2025-04-22 |
| perl-retroseq | public | RetroSeq: discovery and genotyping of TEVs from reads in BAM format. | 2025-04-22 |
| abromics_galaxy_json_extractor | public | Tool to convert Galaxy AMR output to abromics project | 2025-04-22 |
| genoflu | public | Influenza data pipeline to automate genotyping assignment. | 2025-04-22 |
| pdivas | public | PDIVAS: Pathogenicity predictor of Deep-Intronic Variants causing Aberrant Splicing | 2025-04-22 |
