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microhapulator
|
public |
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
|
2024-09-17 |
|
pathphynder
|
public |
A workflow for ancient DNA placement into reference phylogenies.
|
2024-09-17 |
|
cnv_facets
|
public |
Detect somatic copy number variants (CNV) in tumour-normal samples using next generation sequencing data
|
2024-09-17 |
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hackgap
|
public |
hackgap (hash-based counting of k-mers with gaps) provides a fast jit-compiled k-kmer counter which supports gapped k-mers.
|
2024-09-16 |
|
pymsaviz
|
public |
MSA visualization python package for sequence analysis
|
2024-09-15 |
|
zga
|
public |
Prokaryotic genome assembly and annotation pipeline
|
2024-09-13 |
|
cellxgene
|
public |
Web application for exploration of large scale scRNA-seq datasets
|
2024-09-13 |
|
bioconvert
|
public |
Convert between bioinformatics formats
|
2024-09-13 |
|
anglerfish
|
public |
Anglerfish, a tool to demultiplex Illumina libraries from ONT data
|
2024-09-13 |
|
micom
|
public |
Microbial community modeling based on cobrapy.
|
2024-09-12 |
|
irescue
|
public |
A tool to quantify transposable elements expression in scRNA-seq.
|
2024-09-12 |
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checkqc
|
public |
A simple program to parse Illumina NGS data and check it for quality criteria.
|
2024-09-12 |
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flumutdb
|
public |
Utility module for FluMut database.
|
2024-09-12 |
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geofetch
|
public |
Downloads data and metadata from GEO and SRA and creates standard PEPs.
|
2024-09-11 |
|
callingcardstools
|
public |
An API and collection of cmd line tools to work with calling cards sequencing data
|
2024-09-11 |
|
tribal
|
public |
TRIBAL is a package to infer B cell lineage trees from single-cell RNA sequencing data.
|
2024-09-11 |
|
schpl
|
public |
Hierarchical progressive learning pipeline for single-cell RNA-sequencing datasets
|
2024-09-11 |
|
diphase
|
public |
A diploid genome phasing tool
|
2024-09-11 |
|
synapseclient
|
public |
Python client for Synapse
|
2024-09-10 |
|
toulligqc
|
public |
A post sequencing QC tool for Oxford Nanopore sequencers.
|
2024-09-10 |
|
duplex-tools
|
public |
Duplex Tools contains a set of utilities for dealing with ONT Duplex sequencing data.
|
2024-09-10 |
|
xengsort
|
public |
A fast xenograft read sorter based on space-efficient k-mer hashing
|
2024-09-10 |
|
pod5
|
public |
Oxford Nanopore Technologies Pod5 File Format Python API and Tools.
|
2024-09-10 |
|
freebayes
|
public |
Bayesian haplotype-based polymorphism discovery and genotyping
|
2024-09-10 |
|
mtnucratio
|
public |
A small tool to determine MT to Nuclear ratios for NGS data.
|
2024-09-10 |
|
lib-pod5
|
public |
Python bindings for the POD5 file format.
|
2024-09-10 |
|
perl-mce-shared
|
public |
MCE extension for sharing data supporting threads and processes
|
2024-09-10 |
|
telometer
|
public |
A simple regular expression based method for measuring individual, chromosome-specific telomere lengths from long-read sequencing data.
|
2024-09-09 |
|
seqchromloader
|
public |
Sequence and chromatin dataloader for deep learning
|
2024-09-09 |
|
graphmap
|
public |
A highly sensitive and accurate mapper for long, error-prone reads
|
2024-09-09 |
|
snakemake-executor-plugin-drmaa
|
public |
A snakemake executor plugin for submission of jobs via DRMAA.
|
2024-09-09 |
|
scnic
|
public |
SCNIC: Sparse Cooccurence Network Investigation for Compositional data
|
2024-09-06 |
|
annonars
|
public |
Genome annotation based on Rust and RocksDB.
|
2024-09-06 |
|
cami-amber
|
public |
AMBER: Assessment of Metagenome BinnERs
|
2024-09-06 |
|
shorttracks
|
public |
ShortTracks : Useful length- and strand-based coverage files (bigwig) from small RNA-seq alignments (BAM)
|
2024-09-05 |
|
strucvis
|
public |
strucVis : Display small RNA depth of coverage on a predicted RNA secondary structure
|
2024-09-05 |
|
starcatpy
|
public |
Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs.
|
2024-09-05 |
|
handyreadgenotyper
|
public |
Tool for training model and classifying reads from environmental ONT amplicon sequencing.
|
2024-09-05 |
|
annotsv
|
public |
Annotation and Ranking of Structural Variation
|
2024-09-05 |
|
allo
|
public |
Multi-mapped read rescue strategy for gene regulatory analyses
|
2024-09-05 |
|
clipandmerge
|
public |
Clip&Merge is a tool to clip off adapters from sequencing reads and merge overlapping paired end reads together.
|
2024-09-05 |
|
dedup
|
public |
DeDup is a tool for read deduplication in paired-end read merging (e.g. for ancient DNA experiments).
|
2024-09-05 |
|
bcbio-gff
|
public |
A Python library to read and write Generic Feature Format (GFF).
|
2024-09-05 |
|
beacon2-import
|
public |
Seamlessly import and query genomic variant data from a beacon
|
2024-09-04 |
|
jvarkit
|
public |
Java utilities for Bioinformatics.
|
2024-09-03 |
|
mehari
|
public |
VEP-like tool for sequence ontology and HGVS annotation of VCF files written in Rust.
|
2024-09-03 |
|
beav
|
public |
beav: Bacterial genome and mobile element annotation pipeline
|
2024-09-02 |
|
wfmash
|
public |
a pangenome-scale aligner
|
2024-09-02 |
|
blast2galaxy
|
public |
A Python package with a CLI and API to perform BLAST queries against Galaxy servers
|
2024-09-02 |
|
dbcanlight
|
public |
A lightweight CAZyme annotation tool
|
2024-08-30 |
