| Package Name | Access | Summary | Updated |
|---|---|---|---|
| memote | public | the genome-scale metabolic model test suite | 2025-04-22 |
| r-deconcell | public | DeconCell is an statitsical framework for generating cell proportions predictive models using bulk expresion data. It currently has pre-calculated models | 2025-04-22 |
| pycov3 | public | Generate cov3 files used in DEMIC | 2025-04-22 |
| cgt | public | Calculate a core genome threshold (cgt) from metagenome data | 2025-04-22 |
| skyline2isocor | public | Convert skyline output to IsoCor input format | 2025-04-22 |
| rtk2 | public | rtk2 - a CLI rarefaction toolkit for OTU tables | 2025-04-22 |
| floria | public | Floria is method for recovering strain-level haplotypes and clusters of reads from metagenomic short or long read sequencing data by haplotype phasing. | 2025-04-22 |
| revoluzer | public | Genome rearrangement analysis tools | 2025-04-22 |
| massdash | public | MassDash is a streamlined DIA mass spec visualization, analysis, optimization, and rapid prototyping. | 2025-04-22 |
| mgatk | public | Mitochondrial genome analysis toolkit. | 2025-04-22 |
| tntblast | public | Searching DNA/RNA sequence databases with PCR and/or probe queries | 2025-04-22 |
| maegatk | public | Mitochondrial Alteration Enrichment and Genome Analysis Toolkit | 2025-04-22 |
| htsinfer | public | HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data | 2025-04-22 |
| evigene | public | A genome informatics project for Evidence Directed Gene Construction for Eukaryotes | 2025-04-22 |
| attotree | public | rapid estimation of phylogenetic trees using sketching | 2025-04-22 |
| pygenetic_code | public | Python code for translating sequences using different NCBI translation tables and genetic codes | 2025-04-22 |
| virusrecom | public | An information-theory-based method for recombination detection of viral lineages. | 2025-04-22 |
| complexcgr | public | Encoders and Image representation of DNA/RNA sequences based on the Chaos Game Representation of DNA | 2025-04-22 |
| vcfphasesets | public | Get variants as phase sets from a VCF file using pysam. | 2025-04-22 |
| deepmei | public | A tool to detect mobile elements insertion | 2025-04-22 |
| cellbender | public | A software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data | 2025-04-22 |
| bioconductor-cdi | public | Clustering Deviation Index (CDI) | 2025-04-22 |
| bioconductor-plyinteractions | public | Extending tidy verbs to genomic interactions | 2025-04-22 |
| bioconductor-hicvenndiagram | public | Venn Diagram for genomic interaction data | 2025-04-22 |
| bioconductor-iseede | public | iSEE extension for panels related to differential expression analysis | 2025-04-22 |
