| Package Name | Access | Summary | Updated |
|---|---|---|---|
| colorid_bv | public | Experiments with using BIGSI data structure for metagenomic and QC applications | 2025-04-22 |
| get_orfs | public | Fast extraction of ORFs in all possible translation tables | 2025-04-22 |
| gapseq | public | Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks | 2025-04-22 |
| shigapass | public | ShigaPass: An in silico tool to predict Shigella serotypes | 2025-04-22 |
| cured | public | Classification Using Restriction Enzyme Diagnostics | 2025-04-22 |
| mmseqs2-server | public | Server for MMseqs2, Foldseek and ColabFold | 2025-04-22 |
| pstrain | public | An Iterative Microbial Strains Profiling Algorithm for Shotgun Metagenomic Sequencing Data | 2025-04-22 |
| dechat | public | Repeat and haplotype aware error correction in nanopore sequencing reads with Dechat | 2025-04-22 |
| liqa | public | A statistical tool to quantify isoform-specific expression using long-read RNA-seq. | 2025-04-22 |
| vclean | public | vClean: Assessing the contamination of viral genomes | 2025-04-22 |
| sccmec | public | A tool for typing SCCmec cassettes in assemblies | 2025-04-22 |
| kalamari | public | A curated database of completed assemblies with taxonomy IDs | 2025-04-22 |
| wgatools | public | A Rust library and tools for whole genome alignment files. | 2025-04-22 |
| ripcal | public | RIPCAL is used for the bioinformatic analysis of repeat-induced point mutation (RIP) in fungal genome sequences | 2025-04-22 |
| r-dsb | public | Normalizing and denoising protein expression data from droplet-based single cell profiling | 2025-04-22 |
| perl-bio-kmer | public | A perl module for helping with kmer analysis. | 2025-04-22 |
| metamate | public | metaMATE: your metabarcoding friend! | 2025-04-22 |
| radiant | public | Annotate proteomes with protein domains | 2025-04-22 |
| beacon2-import | public | Seamlessly import and query genomic variant data from a beacon | 2025-04-22 |
| rnamining | public | Package to predict potential coding of RNA sequences provided in fasta format | 2025-04-22 |
| tir-learner | public | An ensemble pipeline for terminal inverted repeat (TIR) transposable elements annotation. | 2025-04-22 |
| canopy | public | Canopy - Metagenomics Canopy Clustering Implementation | 2025-04-22 |
| unassigner | public | Type strain identification for 16S reads | 2025-04-22 |
| tmhg | public | tMHG-Finder is a tree-guided tool to partition whole genomes into maximal homologous groups. | 2025-04-22 |
| helitronscanner | public | HelitronScanner uncovers a large overlooked cache of Helitron transposons in many genomes | 2025-04-22 |
