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fg-sra

Community

High-performance SRA-to-SAM/BAM/FASTQ converter.

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::fg-sra

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Usage Tracking

0.2.0
0.1.0
2 / 8 versions selected
Downloads (Last 6 months): 0

Description

fg-sra is a high-performance toolkit for converting NCBI SRA archives. fg-sra tosam replaces sam-dump, writing SAM, BAM, FASTA, or FASTQ with multi-threaded processing, genomic region filtering, quality score quantization, and reference caching. fg-sra fastq writes FASTQ in spot order with mates paired, and fg-sra info describes an archive's kind, totals, qualities, read names, and read layout.

About

Summary

High-performance SRA-to-SAM/BAM/FASTQ converter.

Last Updated

Oct 2, 2026 at 16:20

License

MIT

Supported Platforms

linux-aarch64
linux-64
macOS-64
macOS-arm64