fg-sra
High-performance SRA-to-SAM/BAM/FASTQ converter.
High-performance SRA-to-SAM/BAM/FASTQ converter.
To install this package, run one of the following:
fg-sra is a high-performance toolkit for converting NCBI SRA archives.
fg-sra tosam replaces sam-dump, writing SAM, BAM, FASTA, or FASTQ with
multi-threaded processing, genomic region filtering, quality score
quantization, and reference caching. fg-sra fastq writes FASTQ in spot
order with mates paired, and fg-sra info describes an archive's kind,
totals, qualities, read names, and read layout.
Summary
High-performance SRA-to-SAM/BAM/FASTQ converter.
Last Updated
Oct 2, 2026 at 16:20
License
MIT
Supported Platforms
GitHub Repository
https://github.com/fg-labs/fg-sraDocumentation
https://github.com/fg-labs/fg-sra/blob/v0.2.0/README.md