fasta2genotype
Convert Stacks haplotype FASTA files into input for population-genetic software.
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Description
fasta2genotype converts the per-sample haplotype FASTA file written by the Stacks populations program (Stacks 1 and 2) into input files for population-genetic software, including Structure, Genepop, Arlequin, migrate-n, G-PhoCS, PHYLIP, TreeMix, LFMM, DIYABC, BayeScan, samBada and GenAlEx, with optional quality filters.
About
Summary
Convert Stacks haplotype FASTA files into input for population-genetic software.
Last Updated
Oct 13, 2026 at 18:45
License
MIT
Supported Platforms
noarch
GitHub Repository
https://github.com/paulmaier/fasta2genotypeDocumentation
https://github.com/paulmaier/fasta2genotype#readme