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csi-ssu

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CSI SSU screening tool for genomic and transcriptomic data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::csi-ssu

Usage Tracking

1.0.3
1.0.2
1.0.1
1.0.0
4 / 8 versions selected
Downloads (Last 6 months): 0

Description

A command-line tool for screening SSU (Small Subunit ribosomal RNA) sequences in genomic and transcriptomic data. This tool helps identify and classify SSU sequences using phylogenetic placement in SSU reference packages built from PR2 via pplacer.

Features include automated SSU screening using BLAST, MAFFT, and pplacer, phylogenetic placement for contamination screening and approximate taxonomic classification, and a command-line interface for easy integration into pipelines.

About

Summary

CSI SSU screening tool for genomic and transcriptomic data

Last Updated

Mar 24, 2026 at 00:15

License

MIT

Total Downloads

121

Version Downloads

28

Supported Platforms

noarch