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covsnap

Community

Coverage inspector for targeted sequencing QC (hg38)

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::covsnap

Usage Tracking

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Description

covsnap computes per-target and per-exon depth metrics from BAM/CRAM files, producing an interactive HTML report with PASS/FAIL classifications and visual coverage summaries. Includes a cross-platform graphical interface (Tkinter) and supports gene symbols (single or comma-separated), genomic regions, and BED files as input. Ships with a bundled GENCODE v44 hg38 gene index — no internet or GTF files required at runtime.

About

Summary

Coverage inspector for targeted sequencing QC (hg38)

Last Updated

Apr 19, 2026 at 02:18

License

MIT

Supported Platforms

noarch