covsnap
Coverage inspector for targeted sequencing QC (hg38)
Coverage inspector for targeted sequencing QC (hg38)
To install this package, run one of the following:
covsnap computes per-target and per-exon depth metrics from BAM/CRAM files, producing a machine-readable raw TSV and a human-readable interpreted report with PASS/FAIL classifications. Supports gene symbols, genomic regions, and BED files as input. Ships with a bundled GENCODE v44 hg38 gene index — no internet or GTF files required at runtime.
Summary
Coverage inspector for targeted sequencing QC (hg38)
Last Updated
Feb 25, 2026 at 15:19
License
MIT
Total Downloads
33
Version Downloads
13
Supported Platforms
GitHub Repository
https://github.com/enes-ak/covsnapDocumentation
https://github.com/enes-ak/covsnap/blob/main/README.md