covsnap
Coverage inspector for targeted sequencing QC (hg38)
Coverage inspector for targeted sequencing QC (hg38)
To install this package, run one of the following:
covsnap computes per-target and per-exon depth metrics from BAM/CRAM files, producing an interactive HTML report with PASS/FAIL classifications and visual coverage summaries. Includes a cross-platform graphical interface (Tkinter) and supports gene symbols (single or comma-separated), genomic regions, and BED files as input. Ships with a bundled GENCODE v44 hg38 gene index — no internet or GTF files required at runtime.
Summary
Coverage inspector for targeted sequencing QC (hg38)
Last Updated
Apr 19, 2026 at 02:18
License
MIT
Supported Platforms
GitHub Repository
https://github.com/enes-ak/covsnapDocumentation
https://github.com/enes-ak/covsnap/blob/main/README.md