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covsnap

Community

Coverage inspector for targeted sequencing QC (hg38)

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::covsnap

Usage Tracking

0.1.1
0.1.0
2 / 8 versions selected
Downloads (Last 6 months): 0

Description

covsnap computes per-target and per-exon depth metrics from BAM/CRAM files, producing a machine-readable raw TSV and a human-readable interpreted report with PASS/FAIL classifications. Supports gene symbols, genomic regions, and BED files as input. Ships with a bundled GENCODE v44 hg38 gene index — no internet or GTF files required at runtime.

About

Summary

Coverage inspector for targeted sequencing QC (hg38)

Last Updated

Feb 25, 2026 at 15:19

License

MIT

Total Downloads

33

Version Downloads

13

Supported Platforms

noarch