bioconductor-tpsvg
Thin plate models to detect spatially variable genes
Thin plate models to detect spatially variable genes
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The goal of tpSVG is to detect and visualize spatial variation in the gene expression for spatially resolved transcriptomics data analysis. Specifically, tpSVG introduces a family of count-based models, with generalizable parametric assumptions such as Poisson distribution or negative binomial distribution. In addition, comparing to currently available count-based model for spatially resolved data analysis, the tpSVG models improves computational time, and hence greatly improves the applicability of count-based models in SRT data analysis.
Summary
Thin plate models to detect spatially variable genes
Last Updated
Dec 22, 2024 at 11:51
License
MIT + file LICENSE
Total Downloads
183
Supported Platforms