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bioconductor-tpsvg

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Thin plate models to detect spatially variable genes

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-tpsvg

Usage Tracking

1.2.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

The goal of tpSVG is to detect and visualize spatial variation in the gene expression for spatially resolved transcriptomics data analysis. Specifically, tpSVG introduces a family of count-based models, with generalizable parametric assumptions such as Poisson distribution or negative binomial distribution. In addition, comparing to currently available count-based model for spatially resolved data analysis, the tpSVG models improves computational time, and hence greatly improves the applicability of count-based models in SRT data analysis.

About

Summary

Thin plate models to detect spatially variable genes

Last Updated

Dec 22, 2024 at 11:51

License

MIT + file LICENSE

Total Downloads

183

Supported Platforms

noarch