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bioconductor-targetscore

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TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-targetscore

Usage Tracking

1.44.0
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Total downloads: 0

Description

Infer the posterior distributions of microRNA targets by probabilistically modelling the likelihood microRNA-overexpression fold-changes and sequence-based scores. Variaitonal Bayesian Gaussian mixture model (VB-GMM) is applied to log fold-changes and sequence scores to obtain the posteriors of latent variable being the miRNA targets. The final targetScore is computed as the sigmoid-transformed fold-change weighted by the averaged posteriors of target components over all of the features.

About

Summary

TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information

Information Last Updated

Apr 22, 2025 at 15:28

License

GPL-2

Total Downloads

41.3K

Platforms

Linux 64 Version: 1.18.0
noarch Version: 1.44.0
macOS 64 Version: 1.18.0