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bioconductor-spicey

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Calculates cell type specificity from single cell data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-spicey

Usage Tracking

1.0.0
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Downloads (Last 6 months): 0

Description

SPICEY (SPecificity Index for Coding and Epigenetic activitY) is an R package designed to quantify cell-type specificity in single-cell transcriptomic and epigenomic data, particularly scRNA-seq and scATAC-seq. It introduces two complementary indices: the Gene Expression Tissue Specificity Index (GETSI) and the Regulatory Element Tissue Specificity Index (RETSI), both based on entropy to provide continuous, interpretable measures of specificity. By integrating gene expression and chromatin accessibility, SPICEY enables standardized analysis of cell-type-specific regulatory programs across diverse tissues and conditions.

About

Summary

Calculates cell type specificity from single cell data

Last Updated

Mar 2, 2026 at 18:28

License

Artistic-2.0

Supported Platforms

noarch