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bioconductor-scannotatr

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Pretrained learning models for cell type prediction on single cell RNA-sequencing data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-scannotatr

Usage Tracking

1.12.0
1.8.0
1.6.0
1.4.0
1.0.0
5 / 8 versions selected
Total downloads: 0

Description

The package comprises a set of pretrained machine learning models to predict basic immune cell types. This enables all users to quickly get a first annotation of the cell types present in their dataset without requiring prior knowledge. scAnnotatR also allows users to train their own models to predict new cell types based on specific research needs.

About

Summary

Pretrained learning models for cell type prediction on single cell RNA-sequencing data

Information Last Updated

Apr 22, 2025 at 15:29

License

MIT + file LICENSE

Total Downloads

7.5K

Platforms

noarch Version: 1.12.0