CMD + K

bioconductor-osta.data

Community

OSTA book data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-osta.data

Usage Tracking

1.2.1
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

'OSTA.data' is a companion package for the "Orchestrating Spatial Transcriptomics Analysis" (OSTA) with Bioconductor online book. Throughout OSTA, we rely on a set of publicly available datasets that cover different sequencing- and imaging-based platforms, such as Visium, Visium HD, Xenium (10x Genomics) and CosMx (NanoString). In addition, we rely on scRNA-seq (Chromium) data for tasks, e.g., spot deconvolution and label transfer (i.e., supervised clustering). These data been deposited in an Open Storage Framework (OSF) repository, and can be queried and downloaded using functions from the 'osfr' package. For convenience, we have implemented 'OSTA.data' to query and retrieve data from our OSF node, and cache retrieved Zip archives using 'BiocFileCache'.

About

Summary

OSTA book data

Last Updated

Feb 9, 2026 at 07:11

License

Artistic-2.0

Supported Platforms

noarch