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bioconda / packages / bioconductor-oppar 1.30.0

Outlier profile and pathway analysis in R

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v1.30.0
  • linux-64 v1.30.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-oppar
conda install bioconda/label/cf201901::bioconductor-oppar
conda install bioconda/label/gcc7::bioconductor-oppar

Description

The R implementation of mCOPA package published by Wang et al. (2012). Oppar provides methods for Cancer Outlier profile Analysis. Although initially developed to detect outlier genes in cancer studies, methods presented in oppar can be used for outlier profile analysis in general. In addition, tools are provided for gene set enrichment and pathway analysis.


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