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bioconductor-normalize450k

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Preprocessing of Illumina Infinium 450K data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-normalize450k

Usage Tracking

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Description

Precise measurements are important for epigenome-wide studies investigating DNA methylation in whole blood samples, where effect sizes are expected to be small in magnitude. The 450K platform is often affected by batch effects and proper preprocessing is recommended. This package provides functions to read and normalize 450K '.idat' files. The normalization corrects for dye bias and biases related to signal intensity and methylation of probes using local regression. No adjustment for probe type bias is performed to avoid the trade-off of precision for accuracy of beta-values.

About

Summary

Preprocessing of Illumina Infinium 450K data

Last Updated

Dec 16, 2024 at 06:37

License

BSD_2_clause + file LICENSE

Total Downloads

22.3K

Supported Platforms

noarch