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Negative binomial model for scRNA-seq

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-newwave

Usage Tracking

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Description

A model designed for dimensionality reduction and batch effect removal for scRNA-seq data. It is designed to be massively parallelizable using shared objects that prevent memory duplication, and it can be used with different mini-batch approaches in order to reduce time consumption. It assumes a negative binomial distribution for the data with a dispersion parameter that can be both commonwise across gene both genewise.

About

Summary

Negative binomial model for scRNA-seq

Last Updated

Jan 4, 2025 at 03:49

License

GPL-3

Total Downloads

14.0K

Supported Platforms

noarch