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bioconda / packages / bioconductor-newwave 1.12.0

Negative binomial model for scRNA-seq

Installers

  • noarch v1.12.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-newwave

Description

A model designed for dimensionality reduction and batch effect removal for scRNA-seq data. It is designed to be massively parallelizable using shared objects that prevent memory duplication, and it can be used with different mini-batch approaches in order to reduce time consumption. It assumes a negative binomial distribution for the data with a dispersion parameter that can be both commonwise across gene both genewise.


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