bioconda / packages / bioconductor-m3d 1.22.0

Identifies differentially methylated regions across testing groups

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.22.0
  • osx-64  v1.22.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-m3d
conda install -c bioconda/label/gcc7 bioconductor-m3d
conda install -c bioconda/label/cf201901 bioconductor-m3d

Description

This package identifies statistically significantly differentially methylated regions of CpGs. It uses kernel methods (the Maximum Mean Discrepancy) to measure differences in methylation profiles, and relates these to inter-replicate changes, whilst accounting for variation in coverage profiles.

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