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bioconductor-johnsonkinasedata

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Kinase PWMs based on data published by Johnson et al. 2023 and Yaron-Barir et al. 2024

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-johnsonkinasedata

Usage Tracking

1.6.0
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Downloads (Last 6 months): 0

Description

The packages provides position specific weight matrices (PWMs) for 303 human serine/threonine and 93 tyrosine kinases originally published in Johnson et al. 2023 (doi:10.1038/s41586-022-05575-3) and Yaron-Barir et al. 2024 (doi:10.1038/s41586-024-07407-y). The package includes basic functionality to score user provided phosphosites. It also includes pre-computed PWM scores ("background scores") for a large collection of curated human phosphosites which can be used to rank PWM scores relative to the background scores ("percentile rank").

About

Summary

Kinase PWMs based on data published by Johnson et al. 2023 and Yaron-Barir et al. 2024

Last Updated

Mar 1, 2026 at 20:57

License

MIT + file LICENSE

Supported Platforms

noarch