bioconda / packages / bioconductor-ioniser 2.18.0

Quality Assessment Tools for Oxford Nanopore MinION data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v2.4.0
  • osx-64  v2.4.0
  • noarch  v2.18.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-ioniser
conda install -c bioconda/label/gcc7 bioconductor-ioniser
conda install -c bioconda/label/cf201901 bioconductor-ioniser

Description

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data. It extracts summary statistics from a set of fast5 files and can be used either before or after base calling. In addition to standard summaries of the read-types produced, it provides a number of plots for visualising metrics relative to experiment run time or spatially over the surface of a flowcell.


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