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bioconductor-famat

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Functional analysis of metabolic and transcriptomic data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-famat

Usage Tracking

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Description

Famat is made to collect data about lists of genes and metabolites provided by user, and to visualize it through a Shiny app. Information collected is: - Pathways containing some of the user's genes and metabolites (obtained using a pathway enrichment analysis). - Direct interactions between user's elements inside pathways. - Information about elements (their identifiers and descriptions). - Go terms enrichment analysis performed on user's genes. The Shiny app is composed of: - information about genes, metabolites, and direct interactions between them inside pathways. - an heatmap showing which elements from the list are in pathways (pathways are structured in hierarchies). - hierarchies of enriched go terms using Molecular Function and Biological Process.

About

Summary

Functional analysis of metabolic and transcriptomic data

Last Updated

Jan 4, 2025 at 02:02

License

GPL-3

Total Downloads

12.6K

Supported Platforms

noarch