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bioconductor-easycelltype

Community

Annotate cell types for scRNA-seq data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-easycelltype

Usage Tracking

1.8.0
1.2.0
1.0.0
3 / 8 versions selected
Total downloads: 0

Description

We developed EasyCellType which can automatically examine the input marker lists obtained from existing software such as Seurat over the cell markerdatabases. Two quantification approaches to annotate cell types are provided: Gene set enrichment analysis (GSEA) and a modified versio of Fisher's exact test. The function presents annotation recommendations in graphical outcomes: bar plots for each cluster showing candidate cell types, as well as a dot plot summarizing the top 5 significant annotations for each cluster.

About

Summary

Annotate cell types for scRNA-seq data

Information Last Updated

Apr 22, 2025 at 15:29

License

Artistic-2.0

Total Downloads

3.6K

Platforms

noarch Version: 1.8.0