bioconductor-easycelltype
Annotate cell types for scRNA-seq data
Annotate cell types for scRNA-seq data
To install this package, run one of the following:
We developed EasyCellType which can automatically examine the input marker lists obtained from existing software such as Seurat over the cell markerdatabases. Two quantification approaches to annotate cell types are provided: Gene set enrichment analysis (GSEA) and a modified versio of Fisher's exact test. The function presents annotation recommendations in graphical outcomes: bar plots for each cluster showing candidate cell types, as well as a dot plot summarizing the top 5 significant annotations for each cluster.
Summary
Annotate cell types for scRNA-seq data
Information Last Updated
Apr 22, 2025 at 15:29
License
Artistic-2.0
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3.6K
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