bioconductor-easycelltype
Annotate cell types for scRNA-seq data
Annotate cell types for scRNA-seq data
To install this package, run one of the following:
We developed EasyCellType which can automatically examine the input marker lists obtained from existing software such as Seurat over the cell markerdatabases. Two quantification approaches to annotate cell types are provided: Gene set enrichment analysis (GSEA) and a modified versio of Fisher's exact test. The function presents annotation recommendations in graphical outcomes: bar plots for each cluster showing candidate cell types, as well as a dot plot summarizing the top 5 significant annotations for each cluster.
Summary
Annotate cell types for scRNA-seq data
Last Updated
Jan 4, 2025 at 02:15
License
Artistic-2.0
Total Downloads
3.7K
Supported Platforms