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bioconductor-cypress

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Cell-Type-Specific Power Assessment

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-cypress

Usage Tracking

1.6.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

CYPRESS is a cell-type-specific power tool. This package aims to perform power analysis for the cell-type-specific data. It calculates FDR, FDC, and power, under various study design parameters, including but not limited to sample size, and effect size. It takes the input of a SummarizeExperimental(SE) object with observed mixture data (feature by sample matrix), and the cell-type mixture proportions (sample by cell-type matrix). It can solve the cell-type mixture proportions from the reference free panel from TOAST and conduct tests to identify cell-type-specific differential expression (csDE) genes.

About

Summary

Cell-Type-Specific Power Assessment

Last Updated

Mar 15, 2026 at 16:15

License

GPL-2 | GPL-3

Total Downloads

27

Version Downloads

27

Supported Platforms

noarch