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bioconductor-banksy

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Spatial transcriptomic clustering

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-banksy

Usage Tracking

1.6.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

Banksy is an R package that incorporates spatial information to cluster cells in a feature space (e.g. gene expression). To incorporate spatial information, BANKSY computes the mean neighborhood expression and azimuthal Gabor filters that capture gene expression gradients. These features are combined with the cell's own expression to embed cells in a neighbor-augmented product space which can then be clustered, allowing for accurate and spatially-aware cell typing and tissue domain segmentation.

About

Summary

Spatial transcriptomic clustering

Last Updated

Mar 15, 2026 at 00:08

License

file LICENSE

Total Downloads

46

Version Downloads

46

Supported Platforms

noarch