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ampliclip

Community

Tool to softclip reads in bam files based on amplicon primers

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::ampliclip

Usage Tracking

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Description

Ampliclip is a tool to softclip reads in bam files based on amplicon primers. It identifies primer locations using sequence alignment and correctly adjusts the CIGAR strings of overlapping reads.

About

Summary

Tool to softclip reads in bam files based on amplicon primers

Last Updated

May 4, 2026 at 12:50

License

BSD-3-Clause

Supported Platforms

noarch