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BioBuilds / packages

Package Name Access Summary Updated
perl-io-sessiondata public supporting module for SOAP::Lite 2023-06-16
perl-html-formatter public Base class for HTML formatters 2023-06-16
perl-file-slurp public Simple and Efficient Reading/Writing/Modifying of Complete Files 2023-06-16
perl-class-method-modifiers public Provides Moose-like method modifiers 2023-06-16
perl-capture-tiny public Capture STDOUT and STDERR from Perl, XS or external programs 2023-06-16
perl-params-util public Simple, compact and correct param-checking functions 2023-06-16
perl-spreadsheet-parseexcel public Read information from an Excel file. 2023-06-16
perl-graph public a Perl extension for keeping data partially sorted 2023-06-16
perl-aceperl public Object-Oriented Access to ACEDB Databases 2023-06-16
db public The Berkeley Database (BDB) embedded, key-value database 2023-06-16
gdbm public GNU dbm library of database functions 2023-06-16
expat public XML parser library written in C 2023-06-16
muscle public High-performance multiple sequence alignment tool 2023-06-16
jemalloc public No Summary 2023-06-16
perl-algorithm-diff public Compute `intelligent' differences between two files / lists but use the old (<=0.59) interface. 2023-06-16
tbb public No Summary 2023-06-16
perl-tie-cache public LRU Cache in Memory 2023-06-16
perl-swiss-knife public No Summary 2023-06-16
boost public Boost C++ Libraries - headers and static libraries 2023-06-16
r-dplyr public No Summary 2023-06-16
r-scales public No Summary 2023-06-16
r-ggplot2 public No Summary 2023-06-16
biobuilds public No Summary 2023-06-16
trinity public De-novo transcriptome assembly from Illumina RNA-Seq data 2023-06-16
tophat public Fast splice junction mapper for RNA-Seq reads 2023-06-16
blast public No Summary 2023-06-16
rsem public Accurate quantification of gene and isoform expression from RNA-Seq data 2023-06-16
barracuda public GPU-accelerated implementation of the BWA short read aligner 2023-06-16
biopython public No Summary 2023-06-16
htseq public Framework for processing and analyzing data from high-throughput sequencing assays 2023-06-16
soap3-dp public Ultra-fast, GPU-accelerated tool for short read alignment 2023-06-16
bwa public No Summary 2023-06-16
picard public No Summary 2023-06-16
fastqc public Java quality control application for high throughput sequence data 2023-06-16
igv public No Summary 2023-06-16
variant_tools public Integrated annotation and analysis package for next-generation sequencing data 2023-06-16
bamtools public No Summary 2023-06-16
star public Ultrafast, universal RNA-seq aligner 2023-06-16
pysam public Python module for reading and manipulating samfiles 2023-06-16
openblas public No Summary 2023-06-16
htslib public No Summary 2023-06-16
veclib-headers public Vector intrinsics for IBM POWER architecture 2023-06-16
samtools public No Summary 2023-06-16
graphviz public Graph Visualization Software 2023-06-16
libgd public Library for the dynamic creation of images 2023-06-16
allpathslg public Whole genome shotgun assembler that can generate high quality assemblies from short reads 2023-06-16
emboss public Open Source software suite for molecular biology 2023-06-16
perl-gd public Perl interface to the GD graphics library 2023-06-16
gnuplot public No Summary 2023-06-16
ncbi-ngs-sdk public NCBI API and language bindings for accessing NGS data (C++ bindings only) 2023-06-16

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