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biobakery / packages

Package Name Access Summary Updated
fugassem public FUGAsseM (Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes) is a computational tool based on a “guilt by association” approach to predict functions of novel gene products in the context of microbial communities. It uses machine learning methods to predict functions of microbial proteins by integrating multiple types of community-wide data. 2025-03-27
metawibele public MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome 2025-03-25
humann public HUMAnN: The HMP Unified Metabolic Analysis Network, version 3 2025-03-25
ppanini public PPANINI: Prioritization and Prediction of functional Annotations for Novel and Important genes via automated data Network Integration. 2025-03-25
biobakery_demos public biobakery_demos 2025-03-25
waafle public WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events 2025-03-25
micropita public MicroPITA 2025-03-25
mlpy public mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and the GNU Scientific Libraries. 2025-03-25
shortbred public ShortBRED: Short, Better Representative Extract Dataset 2025-03-25
breadcrumbs public No Summary 2025-03-25
graphlan public GraphlAn 2025-03-25
biobakery_workflows public bioBakery workflows: A collection of meta-omic analysis workflows 2025-03-25
anadama2 public AnADAMA2: Another Automated Data Analysis Management Application 2 2025-03-25
leveldb public leveldb 2025-03-25
maaslin2 public MaAsLin2 2025-03-25
panphlan public PanPhlAn - strain detection and characterization 2025-03-25
hclust2 public Hclust2: A tool for plotting heatmaps 2025-03-25
halla public HAllA: Hierarchically All-against-All Association Testing 2025-03-25
humann2 public HUMAnN2: The HMP Unified Metabolic Analysis Network 2 2025-03-25
kneaddata public KneadData is a tool designed to perform quality control on metagenomic sequencing data, especially data from microbiome experiments. 2025-03-25

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