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humann
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public |
HUMAnN: The HMP Unified Metabolic Analysis Network, version 3
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2025-03-11 |
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parathaa
|
public |
PARATHAA(Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assignments for Amplicons) is a tool used for the taxonomic assignment of 16S rRNA gene sequences that takes into account the uncertainty associated with using specific variable regions/primers.
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2025-03-05 |
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fugassem
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public |
FUGAsseM (Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes) is a computational tool based on a “guilt by association” approach to predict functions of novel gene products in the context of microbial communities. It uses machine learning methods to predict functions of microbial proteins by integrating multiple types of community-wide data.
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2025-02-25 |
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kneaddata
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public |
KneadData is a tool designed to perform quality control on metagenomic sequencing data, especially data from microbiome experiments.
|
2025-02-25 |
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waafle
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public |
WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events
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2024-10-15 |
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metawibele
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public |
MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome
|
2024-08-19 |
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halla
|
public |
HAllA: Hierarchically All-against-All Association Testing
|
2024-08-19 |
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shortbred
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public |
ShortBRED: Short, Better Representative Extract Dataset
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2023-06-16 |
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mlpy
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public |
mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and the GNU Scientific Libraries.
|
2023-06-16 |
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biobakery_demos
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public |
biobakery_demos
|
2023-06-16 |
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ppanini
|
public |
PPANINI: Prioritization and Prediction of functional Annotations for Novel and Important genes via automated data Network Integration.
|
2023-06-16 |
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micropita
|
public |
MicroPITA
|
2023-06-16 |
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graphlan
|
public |
GraphlAn
|
2023-06-16 |
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breadcrumbs
|
public |
No Summary
|
2023-06-16 |
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anadama2
|
public |
AnADAMA2: Another Automated Data Analysis Management Application 2
|
2023-06-16 |
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biobakery_workflows
|
public |
bioBakery workflows: A collection of meta-omic analysis workflows
|
2023-06-16 |
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leveldb
|
public |
leveldb
|
2023-06-16 |
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maaslin2
|
public |
MaAsLin2
|
2023-06-16 |
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panphlan
|
public |
PanPhlAn - strain detection and characterization
|
2023-06-16 |
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hclust2
|
public |
Hclust2: A tool for plotting heatmaps
|
2023-06-16 |
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humann2
|
public |
HUMAnN2: The HMP Unified Metabolic Analysis Network 2
|
2023-06-16 |
