biobakery
by biobakery
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Packages
| Name | Latest Version | Summary | Updated | License |
|---|
| anadama2 | 0.10.0 | AnADAMA2: Another Automated Data Analysis Management Application 2 | Mar 25, 2025 | MIT |
| biobakery_demos | 1.6 | biobakery_demos | Mar 25, 2025 | MIT |
| biobakery_workflows | 3.1 | bioBakery workflows: A collection of meta-omic analysis workflows | Mar 25, 2025 | MIT |
| breadcrumbs | 0.93 | — | Mar 25, 2025 | — |
| fugassem | 0.3.8 | FUGAsseM (Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in Microbiomes) is a computational tool based on a “guilt by association” approach to predict functions of novel gene products in the context of microbial communities. It uses machine learning methods to predict functions of microbial proteins by integrating multiple types of community-wide data. | Mar 28, 2025 | MIT |
| graphlan | 1.1.3 | GraphlAn | Mar 25, 2025 | MIT |
| halla | 0.8.40 | HAllA: Hierarchically All-against-All Association Testing | Mar 25, 2025 | MIT |
| hclust2 | 1.0.0 | Hclust2: A tool for plotting heatmaps | Mar 25, 2025 | MIT |
| humann | 4.0.0a1 | HUMAnN: The HMP Unified Metabolic Analysis Network, version 3 | Mar 25, 2025 | MIT |
| humann2 | 2.8.1 | HUMAnN2: The HMP Unified Metabolic Analysis Network 2 | Mar 25, 2025 | MIT |
| kneaddata | 0.12.3 | KneadData is a tool designed to perform quality control on metagenomic sequencing data, especially data from microbiome experiments. | Jun 24, 2025 | MIT |
| leveldb | 0.193 | leveldb | Mar 25, 2025 | — |
| maaslin2 | 0.99.1 | MaAsLin2 | Mar 25, 2025 | MIT |
| metawibele | 0.4.8 | MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome | Mar 25, 2025 | MIT |
| micropita | 8.1 | MicroPITA | Mar 25, 2025 | MIT |
| mlpy | 3.5.0 | mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and the GNU Scientific Libraries. | Mar 25, 2025 | GPL3 |
| panphlan | 1.2.1.3_a25bc29 | PanPhlAn - strain detection and characterization | Mar 25, 2025 | MIT |
| parathaa | 0.2.1 | PARATHAA(Preserving and Assimilating Region-specific Ambiguities in Taxonomic Hierarchical Assignments for Amplicons) is a tool used for the taxonomic assignment of 16S rRNA gene sequences that takes into account the uncertainty associated with using specific variable regions/primers. | Mar 28, 2025 | MIT |
| ppanini | 0.7.4 | PPANINI: Prioritization and Prediction of functional Annotations for Novel and Important genes via automated data Network Integration. | Mar 25, 2025 | MIT |
| shortbred | 0.9.3_dev_702e3ef | ShortBRED: Short, Better Representative Extract Dataset | Mar 25, 2025 | MIT |
| waafle | 1.1.0 | WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events | Mar 25, 2025 | MIT |