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mity

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Mity is a bioinformatic analysis pipeline designed to call mitochondrial SNV and INDEL variants from Whole Genome Sequencing (WGS) data.

Installation

To install this package, run one of the following:

Conda
$conda install bfxcss::mity

Usage Tracking

1.1.0
1 / 8 versions selected
Downloads (Last 6 months): 0

Description

Mity can:

  • identify very low-heteroplasmy variants, even <1% heteroplasmy when there is sufficient read-depth (eg >1000x)
  • filter out common artefacts that arise from high-depth sequencing
  • easily integrate with existing nuclear DNA analysis pipelines (mity merge)
  • provide an annotated report, designed for clinicians and researchers to interrogate

About

Summary

Mity is a bioinformatic analysis pipeline designed to call mitochondrial SNV and INDEL variants from Whole Genome Sequencing (WGS) data.

Last Updated

Feb 28, 2025 at 07:39

License

MIT

Total Downloads

4

Supported Platforms

noarch