|
crossmap
|
None |
Convenient conversion of genome coordinates between different assemblies
|
2023-06-16 |
|
ete2
|
None |
Phylogenetic tree analyses and exploration
|
2023-06-16 |
|
hmmlearn
|
public |
Hidden Markov Models in Python, with scikit-learn like API
|
2023-06-16 |
|
pyloh
|
None |
Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity
|
2023-06-16 |
|
seqcluster
|
public |
Small RNA-seq pipeline
|
2023-06-16 |
|
metasv
|
None |
An accurate and integrative structural-variant caller for next generation sequencing
|
2023-06-16 |
|
pythonpy
|
public |
the swiss army knife of the command line
|
2023-06-16 |
|
seqcluster_lite
|
None |
small RNA-seq pipeline for bcbio
|
2023-06-16 |
|
azure-sdk-for-python
|
public |
This project provides a set of Python packages that make it easy to access the Microsoft Azure components such as ServiceManagement, Storage, and ServiceBus.
|
2023-06-16 |
|
prettytable
|
public |
No Summary
|
2023-06-16 |
|
pytabix
|
None |
fast random access to sorted files compressed with bgzip and indexed by tabix
|
2023-06-16 |
|
htseq
|
None |
A framework to process and analyze data from high-throughput sequencing (HTS) assays
|
2023-06-16 |
|
svtyper
|
None |
Bayesian genotyper for structural variants
|
2023-06-16 |
|
phylowgs
|
None |
Application for inferring subclonal composition and evolution from whole-genome sequencing data
|
2023-06-16 |
|
hap.py
|
None |
No Summary
|
2023-06-16 |
|
ciso8601
|
None |
Fast ISO8601 date time parser for Python written in C
|
2023-06-16 |
|
arvados-python-client
|
None |
Python API for Arvados, an open source platform for managing and analyzing biomedical big data
|
2023-06-16 |
|
pyfaidx
|
None |
efficient pythonic random access to fasta subsequences
|
2023-06-16 |
|
vgraph
|
None |
No Summary
|
2023-06-16 |
|
awscli
|
None |
No Summary
|
2023-06-16 |
|
pybedtools
|
None |
No Summary
|
2023-06-16 |
|
jmespath
|
None |
No Summary
|
2023-06-16 |
|
bcdoc
|
None |
No Summary
|
2023-06-16 |
|
botocore
|
None |
No Summary
|
2023-06-16 |
|
python-graph-dot
|
None |
No Summary
|
2023-06-16 |
|
python-graph-core
|
None |
No Summary
|
2023-06-16 |
|
google-api-python-client
|
None |
No Summary
|
2023-06-16 |
|
uritemplate
|
None |
No Summary
|
2023-06-16 |
|
oauth2client
|
None |
No Summary
|
2023-06-16 |
|
pysam
|
None |
No Summary
|
2023-06-16 |
|
bcbio-nextgen
|
None |
Validated, scalable, community developed variant calling and RNA-seq analysis
|
2023-06-16 |
|
ipython-cluster-helper
|
None |
Tool to easily start up an IPython cluster on different schedulers
|
2023-06-16 |
|
bcbio-nextgen-vm
|
None |
Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
|
2023-06-16 |
|
cnvkit
|
None |
Copy number variant detection from targeted DNA sequencing
|
2023-06-16 |
|
bx-python
|
None |
Toolkit to enable rapid implementation of genome scale analyses.
|
2023-06-16 |
|
pyvcf
|
None |
No Summary
|
2023-06-16 |
|
elasticluster
|
None |
Create, manage and setup computing clusters hosted on a public or private cloud infrastructure.
|
2023-06-16 |
|
gffutils
|
None |
GFF and GTF file manipulation and interconversion
|
2023-06-16 |
|
netifaces
|
None |
No Summary
|
2023-06-16 |
|
cpat
|
None |
Coding Potential Assessment Tool
|
2023-06-16 |
